Entity_Type:
Entity_Type_Label: Collection Data
Entity_Type_Definition: Data set for samples collected from wild birds in Alaska, 2015
Entity_Type_Definition_Source: Author defined
Attribute:
Attribute_Label: Sample ID
Attribute_Definition:
Individual identifier of each sample included in the analysis. Sample ID includes a code for location (MDO = Middleton Island, Alaska, MANO = outer Yukon-Kuskokwim Delta, Alaska) followed by a unique number for the sample (001-350).
MDO samples also contain a species code in between location and number identifiers (BLKI = Black-legged kittiwake, GWGU = Glaucous-winged gull),
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain: Unique identifier for a sample.
Attribute:
Attribute_Label: Collection Date
Attribute_Definition: Date of sample collection in Day, Month, Year format.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 01-Jun-2015
Range_Domain_Maximum: 14-Jun-2015
Attribute_Units_of_Measure: date
Attribute:
Attribute_Label: Location
Attribute_Definition: Geographic location where sampling occurred.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Middleton Island, Alaska
Enumerated_Domain_Value_Definition: Middleton Island, which is located in the Gulf of Alaska.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: outer Yukon-Kuskokwim Delta, Alaska
Enumerated_Domain_Value_Definition:
Lands and waters adjacent to the Manokinak River in western Alaska.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: Species
Attribute_Definition:
Common name of the avian species sampled. For scientific name, use the common name in the taxonomy section of this metadata. Feces of uncertain host origin were classified into the following categories based on the taxa present at time of sampling: goose sp. or tundra swan (subfamily Anatinae), gull sp. (Larus sp.) and phalarope sp. (Phalaropus sp.).
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain:
Species common name are given except for when feces was collected from uncertain hosts, in which case the species were classified into the following categories based on the taxa present at time of sampling: goose sp. or tundra swan (subfamily Anatinae), gull sp. (Larus sp.) and phalarope sp. (Phalaropus sp.).
Attribute:
Attribute_Label: Sample Type
Attribute_Definition: The type of sample that was collected. C=Cloacal, F=fecal.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: F
Enumerated_Domain_Value_Definition:
Fecal sample collected by swirling cotton-tipped applicators in freshly deposited feces and placing in cryovials with bacteria freeze media.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: C
Enumerated_Domain_Value_Definition:
Cloacal sample collected by swirling cotton-tipped applicators in the cloaca of live-captured birds and placing in cryovials with bacteria freeze media.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: Lat
Attribute_Definition:
Approximate sample collection latitude location in decimal degrees North as determined by hand held GPS.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 59.4375 N
Range_Domain_Maximum: 61.1952 N
Attribute:
Attribute_Label: Long
Attribute_Definition:
Approximate sample collection longitude location in decimal West as determined by hand held GPS.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 146.2930 W
Range_Domain_Maximum: 165.1025 W
Attribute:
Attribute_Label: Sample handling notes
Attribute_Definition:
A short description of how each individual sample was handled post-collection; may include information such as the length of time prior to freezing, and temperature of the freezing method.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain: Notes recorded in reference to sample handling.
Entity_Type:
Entity_Type_Label: Non-selective screening
Entity_Type_Definition:
Data sheet with results of non-selective E. coli screening and subsequent antimicrobial susceptibility testing. Fecal material from samples were inoculated, using a sterile cotton swab, into a vial containing 2 ml brain heart infusion broth (BHI-broth; Becton, Dickinson, USA), supplemented with vancomycin (16 mg/L, ICN Biomedicals Inc., USA) and incubated for 18-24 hours at 36 degrees Celsius for enrichment. 10 µl incubated turbid BHI-broth was inoculated on an Uriselect agar plate (Bio-Rad Laboratories, France) to screen for E. coli. One randomly selected pure E.coli colony, confirmed by MALDI-TOF, was chosen from each plate displaying evidence for E. coli growth and tested for antibiotic susceptibility. Antimicrobial susceptibility testing was performed using the following set of antibiotic discs (obtained through Oxoid Ltd, Basingstoke, Hampshire, England): ampicillin (10 µg), cefadroxil (30 µg), chloramphenicol (30µg), ciprofloxacin (5µg), gentamicin (10 µg), mecillinam (10 µg), meropenem (10 µg), nalidixic acid (30 µg), nitrofurantoin (100 µg), piperacillin-tazobactam (36 µg), tetracycline (30 µg), trimethoprim (5 µg), and trimethoprim-sulfamethoxazole (25 µg).
Entity_Type_Definition_Source: Author defined.
Attribute:
Attribute_Label: Sample ID
Attribute_Definition:
Individual identifier of each sample included in the analysis. Sample ID includes a code for location (MDO = Middleton Island, Alaska, MANO = outer Yukon-Kuskokwim Delta, Alaska) followed by a unique number for the sample (001-350).
MDO samples also contain a species code in between location and number identifiers (BLKI = Black-legged kittiwake, GWGU = Glaucous-winged gull),
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain: Unique identifier for a sample.
Attribute:
Attribute_Label: E. coli isolation results
Attribute_Definition:
E. coli isolation results from the described non-selective screening method.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition: Yes, E. coli was isolated.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition: No, E. coli was not isolated.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: nalidixic acid
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: nitrofurantoin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: piperacillin-tazobactam
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: tetracycline
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: trimethoprim
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: trimethoprim-sulfamethoxazole
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: meropenem
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: ciprofloxacin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: ampicillin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: cefadroxil
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: chloramphenicol
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: gentamicin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: mecillinam
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Entity_Type:
Entity_Type_Label: Selective screening
Entity_Type_Definition:
Data sheet with results of selective E. coli screening and subsequent antimicrobial susceptibility testing. Fecal material from samples were inoculated, using a sterile cotton swab, into a vial containing 2ml brain heart infusion broth (BHI-broth; Becton, Dickinson, USA), supplemented with vancomycin (16 mg/L, ICN Biomedicals Inc., USA) and incubated for 18–24 hours at 36 degrees Celsius for enrichment. 10 µl from incubated turbid BHI-broth for all samples from the outer Yukon-Kuskokwim Delta and a sub-set of 65 samples for both black-legged kittiwakes and glaucous-winged gulls collected at Middleton Island (sub-sampling of samples collected from Middleton Island was a function of budgetary constraints) were inoculated onto McConkey plates (Oxoid Ltd, Basingstoke, Hampshire, England) with equally spaced antibiotic discs as follows: ampicillin (10 µg), cefadroxil (30 µg), meropenem (10 µg), nalidixic acid (30 µg), tetracycline (30 µg), and trimetoprim/sulfamethoxazole (1.25/23.75 µg). All antibiotic discs were from Oxoid Ltd, Basingstoke, Hampshire, England. The plates were incubated in aerobic conditions for 18–24 hours at 36˚C. Colonies of E.coli, as confirmed by MALDI-TOF, growing within or at the edge of the inhibition zones were isolated for further antibiotic susceptibility testing. Antimicrobial susceptibility testing was performed using the following set of antibiotic discs (obtained through Oxoid Ltd, Basingstoke, Hampshire, England): ampicillin (10 µg), cefadroxil (30 µg), chloramphenicol (30 µg), ciprofloxacin (5 µg), gentamicin (10 µg), mecillinam (10 µg), meropenem (10 µg), nalidixic acid (30 µg), nitrofurantoin (100 µg), piperacillin-tazobactam (36 µg), tetracycline (30 µg), trimethoprim (5 µg), and trimethoprim-sulfamethoxazole (25 µg).
Entity_Type_Definition_Source: Author defined.
Attribute:
Attribute_Label: Sample ID
Attribute_Definition:
Individual identifier of each sample included in the analysis. Sample ID includes a code for location (MDO = Middleton Island, Alaska, MANO = outer Yukon-Kuskokwim Delta, Alaska) followed by a unique number for the sample (001-350).
MDO samples also contain a species code in between location and number identifiers (BLKI = Black-legged kittiwake, GWGU = Glaucous-winged gull),
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain: Unique identifier for a sample.
Attribute:
Attribute_Label: E. coli isolated from inhibition zone
Attribute_Definition:
The domains in for this attribute describe the E. coli isolation results, specifically whether or not the bacteria was isolated from a colony or colonies growing within the zone of inhibition for one or more of the following antibiotics: ampicillin (10 µg), cefadroxil (30 µg), meropenem (10 µg), nalidixic acid (30 µg), tetracycline (30 µg), and trimetoprim/sulfamethoxazole (1.25/23.75 µg).
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition: Yes, E. coli was isolated.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition: No, E. coli was not isolated.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y, 2 strains a+b
Enumerated_Domain_Value_Definition:
Yes, two strains were identified based on the results of the selection profile: strain a and strain b.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Not screened
Enumerated_Domain_Value_Definition:
This sample was not screened using the selective method described.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: nalidixic acid
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: nitrofurantoin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: piperacillin-tazobactam
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: tetracycline
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aYbN
Enumerated_Domain_Value_Definition:
Strain a was resistant to tetracycline, Strain b was not resistant to tetracycline.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: trimethoprim
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: trimethoprim-sulfamethoxazole
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: meropenem
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: ciprofloxacin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: ampicillin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aYbY
Enumerated_Domain_Value_Definition: Strain a and b were resistant to ampicillin.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aNbY
Enumerated_Domain_Value_Definition:
Strain a was not resistant to ampicillin, Strain b was resistant to ampicillin.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: cefadroxil
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aNbY
Enumerated_Domain_Value_Definition:
Strain a was not resistant to cefadroxil, Strain b was resistant to cefadroxil.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: chloramphenicol
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aNbY
Enumerated_Domain_Value_Definition:
Strain a was not resistant to chloramphenicol, Strain b was resistant to chloramphenicol.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aYbN
Enumerated_Domain_Value_Definition:
Strain a was resistant to chloramphenicol, Strain b was not resistant to chloramphenicol.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: gentamicin
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: mecillinam
Attribute_Definition:
An antimicrobial compound to which isolated samples of E. coli were tested for resistance by measuring a zone of inhibition around an antimicrobial disc via culture.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition:
Yes, the sample isolated demonstrated resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, the sample isolated did not demonstrate resistance to the antimicrobial compound named in the above attribute label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for resistance to a particular antimicrobial compound because no E. coli was isolated via the method described for the entity label.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: aYbN
Enumerated_Domain_Value_Definition:
Strain a was resistant to mecillinam, Strain b was not resistant to mecillinam.
Enumerated_Domain_Value_Definition_Source: Author defined
Entity_Type:
Entity_Type_Label: CHROMagar C3GR
Entity_Type_Definition:
Selective screen results using CHROMagar C3GR, and tests for putative Extended-spectrum Cephalosporin resistance incorporating molecular approaches.
Entity_Type_Definition_Source: Author defined.
Attribute:
Attribute_Label: Sample ID
Attribute_Definition:
Individual identifier of each sample included in the analysis. Sample ID includes a code for location (MDO = Middleton Island, Alaska, MANO = outer Yukon-Kuskokwim Delta, Alaska) followed by a unique number for the sample (001-350).
MDO samples also contain a species code in between location and number identifiers (BLKI = Black-legged kittiwake, GWGU = Glaucous-winged gull),
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain: Unique identifier for a sample.
Attribute:
Attribute_Label: E. coli isolated from CHROMagar C3GR plates
Attribute_Definition: E. coli isolated from CHROMagar C3GR plates
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition: Yes, E. coli was isolated.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition: No, E. coli was not isolated.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: ESBL/AmpC-phenotypes
Attribute_Definition:
A test to identify ESBL/AmpC-phenotypes on Muller-Hinton plates from E. coli isolated from CHROMagar C3GR plates.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Y
Enumerated_Domain_Value_Definition: Yes, ESBL/AmpC-phenotypes were identified
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested because no E. coli was isoated from the CHROMagar C3GR plates.
Enumerated_Domain_Value_Definition_Source: Author defined.
Beginning_Date_of_Attribute_Values: 2017
Attribute:
Attribute_Label: blaCTX-M
Attribute_Definition:
An extended spectrum β-lactamase (ESBL) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaSHV
Attribute_Definition:
An extended spectrum β-lactamase (ESBL) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaTEM
Attribute_Definition:
An extended spectrum β-lactamase (ESBL) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaOXA-1
Attribute_Definition:
An extended spectrum β-lactamase (ESBL) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaMOX-1
Attribute_Definition:
A plasmid-mediated AmpC (pAmpC) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaLAT-1
Attribute_Definition:
A plasmid-mediated AmpC (pAmpC) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaDHA-1
Attribute_Definition:
A plasmid-mediated AmpC (pAmpC) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaACC
Attribute_Definition:
A plasmid-mediated AmpC (pAmpC) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaACT-1
Attribute_Definition:
A plasmid-mediated AmpC (pAmpC) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: blaFOX-1
Attribute_Definition:
A plasmid-mediated AmpC (pAmpC) gene for which E. coli isolates are tested using the molecular methods described.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: N
Enumerated_Domain_Value_Definition:
No, molecular methods applied to the particular E. coli isolate did not identify the gene
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NT
Enumerated_Domain_Value_Definition:
"NT" is a generic term indicating that a sample was not tested for genes associated with antimicrobial resistance via molecular methods because no E. coli was isolated via the CHROMagar C3GR method.
Enumerated_Domain_Value_Definition_Source: Author defined.