Hawaiian Coot (Fulica alai) and Hawaiian Gallinule (Gallinula galeata sandvicensis) Microsatellite and Mitochondrial DNA Data, 2014-2016, Oahu, Kauai, and Molokai, Hawaii

Identification_Information:

Citation:

Citation_Information:

Originator: Sonsthagen, S.A. (ORCID: 0000-0001-6215-5874)
Publication_Date: 20171023
Title:

Geospatial_Data_Presentation_Form: tabular digital data
Series_Information:

Series_Name:

Hawaiian Coot (Fulica alai) and Hawaiian Gallinule (Gallinula galeata sandvicensis) Microsatellite and Mitochondrial DNA Data

Issue_Identification: ver 2.1, October 2020

Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

Suggested Citation: Sonsthagen, S.A., 2017, Hawaiian Coot (Fulica alai) and Hawaiian Gallinule (Gallinula galeata sandvicensis) microsatellite and mitochondrial DNA data, 2014-2016, Oahu, Kauai, Molokai, Hawaii (ver 2.1, October 2020): U.S. Geological Survey Data Release, https://doi.org/10.5066/F74Q7SXC

Online_Linkage: https://doi.org/10.5066/F74Q7SXC
Larger_Work_Citation:

Citation_Information:

Originator: U.S. Geological Survey, Alaska Science Center
Publication_Date: 2015
Title: Genomics of Wildlife
Geospatial_Data_Presentation_Form: website
Series_Information:

Series_Name: Alaska Science Portal
Issue_Identification: 416

Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

This is a link to the broader USGS Alaska Science Center research project supported by these data. Users will find a description of the research project and links to associated reports, publications, and data products.

Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=416

Description:

Abstract:

This data set describes nuclear microsatellite genotypes derived from twenty-one autosomal loci (Fal02, Fal04, Fal07, Fal08, Fal10, Fal12, Fal14-1, Fal16, Fal 17, Fal19, Gch03, Gch06, Gch07, Gch12, Gch13, Gch14, Gch17, Gch19, Pho110, KiRa9-1, and KiRa10) and nucleotide sequence data derived from two mitochondrial DNA loci (control region and NADH dehydrogenase 2). Samples were collected on Oahu, Kauai, Molokai, Hawaii, United States of America. Samples used in the study originated from blood or feather samples collected in the field from live trapped birds or from tissue taken from dead birds or museum specimens according to each institution's load policies and procedures. We compared historical (samples collected in the late 1800s and early 1900s) and modern (collected in 2012-2015) populations.

Purpose:

To examine temporal changes and spatial patterns in genetic diversity between Hawaiian coots and Hawaiian gallinules using samples from Oahu, Kauai, and Molokai, Hawaii, United States of America.

Time_Period_of_Content:

Time_Period_Information:

Range_of_Dates/Times:

Beginning_Date: 2014
Ending_Date: 2016

Currentness_Reference: observed

Status:

Progress: Complete
Maintenance_and_Update_Frequency: None planned

Spatial_Domain:

Description_of_Geographic_Extent: Hawaii, USA
Bounding_Coordinates:

West_Bounding_Coordinate: -159.7901
East_Bounding_Coordinate: -156.7071
North_Bounding_Coordinate: 22.2337
South_Bounding_Coordinate: 21.0716

Keywords:

Theme:

Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC142

Theme:

Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: Biota
Theme_Keyword: Environment

Theme:

Theme_Keyword_Thesaurus: NASA GCMD Earth Science Keyword Thesaurus
Theme_Keyword: Animals/Vertebrates
Theme_Keyword: Birds
Theme_Keyword: Cranes and Allies

Theme:

Theme_Keyword_Thesaurus: USGS CSA Biocomplexity Thesaurus
Theme_Keyword: Population genetic
Theme_Keyword: Genetic variance
Theme_Keyword: Genetic diversity

Theme:

Theme_Keyword_Thesaurus: USGS Thesaurus
Theme_Keyword: Wildlife
Theme_Keyword: Terrestrial ecosystems
Theme_Keyword: Genetic diversity
Theme_Keyword: DNA sequencing
Theme_Keyword: Polymerase chain reaction
Theme_Keyword: Evolution

Theme:

Theme_Keyword_Thesaurus: NIH MeSH Thesaurus
Theme_Keyword: Genetic markers
Theme_Keyword: Microsatellite repeats
Theme_Keyword: DNA, Mitochondrial
Theme_Keyword: Alleles
Theme_Keyword: Genotype

Theme:

Theme_Keyword_Thesaurus: None
Theme_Keyword: Hawaiian Coot
Theme_Keyword: Hawaiian Common Gallinule
Theme_Keyword: Hawaiian Gallinule
Theme_Keyword: Common Gallinule

Place:

Place_Keyword_Thesaurus: USGS Geographic Names Information System
Place_Keyword: Hawaii
Place_Keyword: Oahu
Place_Keyword: Kauai
Place_Keyword: Molokai

Taxonomy:

Keywords/Taxon:

Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: Animals
Taxonomic_Keywords: Birds
Taxonomic_Keywords: Cranes, rails, and allies

Taxonomic_System:

Classification_System/Authority:

Classification_System_Citation:

Citation_Information:

Originator: ITIS Integrated Taxonomic Information System
Publication_Date: Unknown
Title: ITIS Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: online database
Series_Information:

Series_Name: Taxonomic Serial Number
Issue_Identification: TSN: 554260, 176284, 202250

Publication_Information:

Publication_Place: online
Publisher: ITIS-North America

Other_Citation_Details:

Taxonomic details retrieved on September 6, 2017 from the Integrated Taxonomic Information System online database https://www.itis.gov

Online_Linkage: https://www.itis.gov

Classification_System_Modifications:

ITIS currently lists Hawaiian Common Gallinule as Gallinula chloropus sandvicensis. However, the most current taxonomic designation by the American Ornithological Society's (AOU) Check-list of North American Birds ( http://checklist.aou.org/taxa ) considers Common Gallinule to be Gallinula galeata (thus, Hawaiian Gallinule:Gallinula galeata sandvicensis).

Here, we follow the current AOU designation as described in: Chesser, R.T., Banks, R.C., Barker, F.K., Cicero, C., Dunn, J.L., Kratter, A.W., Lovette, I.J., Rasmussen, P.C., Remsen, J.V., Jr., Rising, J.D., Stotz, D.F., Winker, K. 2011. Fifty-second supplement to the American Ornithologists' Union Check-list of North American Birds. The Auk 128(3):600-613 https://doi.org/10.1525/auk.2011.128.3.600 We include the current ITIS Taxonomic Serial Numbers.

Taxonomic_Procedures:

All blood samples originated from live trapped birds, which were released after sampling. All feather samples originated from live trapped birds, which were released after sampling. Tissue samples from Kauai originated from birds that were found dead. For all blood samples, all feather samples, and tissue samples from Kauai, taxonomy was determined by experts in the field using plumage and vocal characteristics. All tissue samples from Oahu originated from museum collections within the U.S. and taxonomic procedures were determined by those institutions.

Taxonomic_Completeness: All samples were identified to species.
Vouchers:

Specimen: tissue (toepad) samples
Repository:

Contact_Information:

Contact_Organization_Primary:

Contact_Organization: American Museum of Natural History

Contact_Address:

Address_Type: Mailing and Physical
Address: Central Park West & 79th St
City: New York
State_or_Province: NY
Postal_Code: 10024

Contact_Voice_Telephone: 212-769-5100

Vouchers:

Specimen: blood samples
Repository:

Contact_Information:

Contact_Organization_Primary:

Contact_Organization: U.S. Fish and Wildlife Service - Pacific Islands Office

Contact_Address:

Address_Type: Mailing and Physical
Address: 300 Ala Moana Blvd RM 3-122
City: Honolulu
State_or_Province: HI
Postal_Code: 96850

Contact_Voice_Telephone: (808) 792-9400

Taxonomic_Classification:

Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:

Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:

Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Taxonomic_Classification:

Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:

Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Taxonomic_Classification:

Taxon_Rank_Name: Family
Taxon_Rank_Value: Rallidae
Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Fulica
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Fulica alai
Applicable_Common_Name: Hawaiian Coot
Applicable_Common_Name: TSN: 554260

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Gallinula
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Gallinula galeata
Applicable_Common_Name: Common Gallinule
Applicable_Common_Name: TSN: 176284
Taxonomic_Classification:

Taxon_Rank_Name: Sub-species
Taxon_Rank_Value: Gallinula galeata sandvicensis
Applicable_Common_Name: Hawaiian Gallinule
Applicable_Common_Name: TSN: 202250

Access_Constraints: None
Use_Constraints:

It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications that reference this dataset.

Point_of_Contact:

Contact_Information:

Contact_Organization_Primary:

Contact_Organization: U.S. Geological Survey, Alaska Science Center

Contact_Address:

Address_Type: Mailing and Physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA

Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov

Data_Set_Credit:

The following museums contributed tissues for this work; Academy of Natural Sciences of Drexel University, American Museum of Natural History, Bernice Pauahi Bishop Museum, Harvard University Museum of Comparative Zoology, Louisiana State University Museum of Natural Science, National Museum of Natural History, and University of California Berkeley Museum of Vertebrate Zoology.

Cross_Reference:

Citation_Information:

Originator: Sonsthagen, S.A.
Originator: Wilson, R.E.
Originator: Underwood, J.G.
Publication_Date: 2018
Title:

Interisland Genetic Structure of two Endangered Hawaiian Waterbirds: the Hawaiian Coot and Hawaiian Gallinule

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Condor
Issue_Identification: 120(4):863-873

Publication_Information:

Publication_Place: online
Publisher: BioOne Complete

Other_Citation_Details:

Sonsthagen S.A., Wilson R.E., Underwood J.G. 2018. Interisland Genetic Structure of two Endangered Hawaiian Waterbirds: the Hawaiian Coot and Hawaiian Gallinule. Condor (120(4):863-873 doi:10.1650/CONDOR-18-98.1

Online_Linkage: https://doi.org/10.1650/CONDOR-18-98.1

Cross_Reference:

Citation_Information:

Originator: Sonsthagen, S.A.
Originator: Wilson, R.E.
Originator: Underwood, J.G.
Publication_Date: 2017
Title:

Genetic implications of bottleneck effects of differing severities on genetic diversity in naturally recovering populations: An example from Hawaiian coot and Hawaiian gallinule

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Ecology and Evolution
Issue_Identification: 7(23):9925–9934

Publication_Information:

Publication_Place: online
Publisher: Wiley

Other_Citation_Details:

Sonsthagen S.A., Wilson R.E., Underwood J.G. 2017. Genetic implications of bottleneck effects of differing severities on genetic diversity in naturally recovering populations: An example from Hawaiian coot and Hawaiian gallinule. Ecology and Evolution 7(23):9925–9934 doi:10.1002/ece3.3530

Online_Linkage: https://doi.org/10.1002/ece3.3530

Data_Quality_Information:

Attribute_Accuracy:

Attribute_Accuracy_Report:

Polymerase chain reaction (PCR) amplification and electrophoresis followed protocols described in Sonsthagen et al. 2004. For quality control purposes, ten percent of the samples and all samples deriving from museum collections were amplified and genotyped in duplicate for the 21 microsatellite and 2 mitochondrial DNA loci.

Logical_Consistency_Report:

Ten percent of all samples were extracted, amplified, and genotyped in duplicate for quality control. No inconsistencies in genotype scores were observed between replicates. Data and metadata were peer-reviewed for accuracy by examining minimum and maximum values. We calculated allelic richness, observed and expected heterozygosities, Hardy-Weinberg equilibrium (HWE), and linkage disequilibrium at the microsatellite loci. Tests for null alleles and allelic dropout were implemented in MicroChecker (see Lineage section for source references). Blank cells in the data are described within each attribute. Attribute data equaling "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").

Completeness_Report:

Museum vouchers that were collected prior to or during the population decline (pre-1940s) were obtained through museum tissue loans for inclusion in this study. Remaining samples were provided by US Fish and Wildlife Service.

Lineage:

Methodology:

Methodology_Type: Lab
Methodology_Description:

Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product"). Blank cells indicate no data were collected for a particular attribute. For quality control purposes, we extracted, amplified, and sequenced, 10% of the samples in duplicate.

Methodology_Citation:

Citation_Information:

Originator: Sonsthagen, S.A.
Originator: Talbot, S.L.
Originator: White, C.M.
Publication_Date: 2004
Title:

Gene flow and genetic characterization of Northern Goshawks breeding in Utah.

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Condor
Issue_Identification: 106(4):826–836

Publication_Information:

Publication_Place: online
Publisher: Oxford University Press

Other_Citation_Details:

Sonsthagen, S.A., Talbot, S.L., White, C.M. 2004. Gene flow and genetic characterization of Northern Goshawks breeding in Utah. Condor 106(4):826–836

Online_Linkage: http://www.jstor.org/stable/3247787

Methodology:

Methodology_Type: Field
Methodology_Description:

Blood samples were collected from the brachial vein and stored in preservation buffer. Tissue samples from Kauai were collected from the breast muscle and stored in preservation buffer. Tissue samples originated from museum voucher specimens of Hawaiian coot (n = 14) and Hawaiian gallinule (n = 23) collected between 1893 and 1939 from Oahu, Hawaii, were obtained through museum tissue loans following respective museum's loan policies and procedures.

Methodology:

Methodology_Type: Lab
Methodology_Description:

We calculated allelic richness, observed and expected heterozygosities, Hardy-Weinberg equilibrium (HWE), and linkage disequilibrium at the microsatellite loci in FSTAT version 2.9.3 (Goudet, 1995). Tests for null alleles and allelic dropout were implemented in MicroChecker (van Oosterhout et al., 2004).

Methodology_Citation:

Citation_Information:

Originator: Goudet, J.
Publication_Date: 1995
Title:

FSTAT (vers. 1.2): a computer program to calculate F-statistics.

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Journal of Heredity
Issue_Identification: 86

Publication_Information:

Publication_Place: online
Publisher: Oxford University Press

Other_Citation_Details:

Goudet J. 1995. FSTAT (vers. 1.2): a computer program to calculate F-statistics. Journal of Heredity 86, 485–486.

Methodology_Citation:

Citation_Information:

Originator: van Oosterhout, C.
Originator: Hutchinson, W.F.
Originator: Wills, D.P.M.
Originator: Shipley, P.
Publication_Date: 2004
Title:

MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Molecular Ecology Notes
Issue_Identification: 4(3):535-538

Publication_Information:

Publication_Place: online
Publisher: Wiley Online Library

Other_Citation_Details:

van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., Shipley, P. 2004. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4(3):535-538 doi:10.1111/j.1471-8286.2004.00684.x

Online_Linkage: https://doi.org/10.1111/j.1471-8286.2004.00684.x

Process_Step:

Process_Description:

Initial microsatellite allele sizes were determined by scoring based on PCR product size relative to an M13 DNA sequence ladder using Gene Profiler 4.05 (Scanalytics, Inc., Fairfax, VA). Subsequent gels included these known size individuals from which relative sizes of unknown individuals were assigned using Gene Profiler 4.05. For this reason, these microsatellite data cannot be combined with data generated outside the USGS Alaska Science Center without molecular size calibration between laboratories. MtDNA sequences from opposite strands were reconciled using Sequencher 4.1.2 (Gene Codes Corporation, Ann Arbor, MI). Tests for null alleles and allelic dropout were implemented in MicroChecker (van Oosterhout et al 2004).

Process_Date: Unknown

Spatial_Data_Organization_Information:

Indirect_Spatial_Reference:

Island names are listed to generally describe locations of sampled birds.

Entity_and_Attribute_Information:

Detailed_Description:

Entity_Type:

Entity_Type_Label: hawaiianCoot_gallinule_DNA_sonsthagen_2014_2016
Entity_Type_Definition:

Table with sample identifying information, collection data, and allele scores (in base pairs) for twenty-one autosomal microsatellite loci used to generate genotype data (Locus names and order of presentation: Fal02, Fal04, Fal07, Fal08, Fal10, Fal12, Fal14-1, Fal16, Fal17, Fal19, Gch03, Gch06, Gch07, Gch12, Gch13, Gch14, Gch17, Gch19, Pho110, KiRa9-1, and KiRa10) and nucleotide sequence data derived from two mitochondrial DNA loci analyzed to describe genetic diversity and structure (control region and NADH dehydrogenase2). Presented in a Comma Separated Value (CSV) formatted table.

Entity_Type_Definition_Source: Author defined

Attribute:

Attribute_Label: Sample_ID
Attribute_Definition:

Unique number to identify each sample. For blood samples, ID is a combination of the last 5 digits of USGS metal leg band number. For museum vouchers ID incorporates the museum specimen number.

Attribute_Definition_Source: Author or museum defined
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier; a numeric of alphanumeric code for each individual sample in this dataset.

Attribute:

Attribute_Label: Taxonomic_designation
Attribute_Definition:

Scientific name (genus and species) of bird from which sample was taken. Identification provided by the collector. Taxonomic details provided in the Taxonomy section of this metadata record.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Gallinula galeata
Enumerated_Domain_Value_Definition: Hawaiian gallinule
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Fulica alai
Enumerated_Domain_Value_Definition: Hawaiian coot
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Sample_Type
Attribute_Definition: Sample tissue type
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Blood
Enumerated_Domain_Value_Definition: Whole blood sample taken from a live captured bird.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Tissue
Enumerated_Domain_Value_Definition:

Breast muscle taken from a dead bird or toe pad tissue sample collected by museum via tissue loan request.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Feather
Enumerated_Domain_Value_Definition: Feather sample taken from a live captured bird.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Originating_Institution
Attribute_Definition: Location where sample originated (either field or museum)
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: AMNH
Enumerated_Domain_Value_Definition: American Museum of Natural History
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: BBM
Enumerated_Domain_Value_Definition: Bernice Pauahi Bishop Museum
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: USFWS-Pacific Island
Enumerated_Domain_Value_Definition:

U.S. Fish and Wildlife Service, Pacific Island National Wildlife Refuge Complex

Enumerated_Domain_Value_Definition_Source: U.S. Fish and Wildlife Service

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: USNM
Enumerated_Domain_Value_Definition: National Museum of Natural History
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: MVZ
Enumerated_Domain_Value_Definition: University of California Berkeley Museum of Vertebrate Zoology
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: MCZ
Enumerated_Domain_Value_Definition: Harvard University Museum of Comparative Zoology
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: LSUMZ
Enumerated_Domain_Value_Definition: Louisiana State University Museum of Natural Science
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: ANSP
Enumerated_Domain_Value_Definition: Academy of Natural Sciences of Drexel University
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Band_number
Attribute_Definition:

Unique field identification code, used to mark individual birds in the field. The final 5 digits of the metal leg band issued by the USGS Bird Banding Lab. Blank cells indicate the individual did not have a tarsal band.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: Unique field identifier

Attribute:

Attribute_Label: Voucher_number
Attribute_Definition:

Unique number assigned to specimen by a museum institution that is maintaining the voucher. Blank cells indicate blood samples collected by the USFWS since these birds were released after sampling and no voucher was collected.

Attribute_Definition_Source: Museum and author defined.
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier; a 4-6 digit numeric combination representing a single individual in this dataset.

Attribute:

Attribute_Label: Sample_Island
Attribute_Definition:

General sampling location of bird for genetic sample within Hawaiian Islands.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Kauai
Enumerated_Domain_Value_Definition: Hawaiian Island where sample was collected.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Oahu
Enumerated_Domain_Value_Definition: Hawaiian Island where sample was collected.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Molokai
Enumerated_Domain_Value_Definition: Hawaiian Island where sample was collected.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Entry_date
Attribute_Definition:

Date data were accessioned at USGS Alaska Science Center data repository.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: 8/30/2017
Enumerated_Domain_Value_Definition:

Date sample was accessioned at USGS Alaska Science Center data repository and represents version 1.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: 8/30/2018
Enumerated_Domain_Value_Definition:

Date sample was accessioned at USGS Alaska Science Center data repository and represents version 2.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Fal02_allele1 through KiRa9-1
Attribute_Definition:

These 42 columns represent 21 autosomal microsatellite loci. Each microsatellite locus genotype is represented by two adjacent columns (i.e., allele1 and allele2) each containing one allele score. Blank cells indicate data were not collected for the sample.

Locus names and order of presentation: Fal02, Fal04, Fal07, Fal08, Fal10, Fal12, Fal14-1, Fal16, Fal17, Fal19, Gch03, Gch06, Gch07, Gch12, Gch13, Gch14, Gch17, Gch19, Pho110, KiRa9-1, and KiRa10

These microsatellite data cannot be combined with data generated outside the Alaska Science Center without molecular size calibration between laboratories.

Details and full citations for microsatellite loci are available at https://doi.org/10.5066/P9GJEX8Y

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: Allele scores (in base pairs) for each microsatellite locus.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: CR_accession
Attribute_Definition:

GenBank Accession Number - unique identifier for the mitochondrial DNA control region (CR) nucleotide sequence, assigned by the National Center for Biotechnology Information (NCBI). Blank cells indicate that sequence data from this locus were not collected for this sample.

Attribute_Definition_Source: NCBI GenBank
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier: GenBank accession number assigned by NCBI. This number may be used to retrieve detailed sample and sequence information from https://www.ncbi.nlm.nih.gov/

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: ND2_accession
Attribute_Definition:

GenBank Accession Number - unique identifier for the ND2 (mitochondrial DNA NADH dehydrogenase 2) nucleotide sequence, assigned by the National Center for Biotechnology Information (NCBI). Blank cells indicate that sequence data from this locus were not collected for this sample.

Attribute_Definition_Source: NCBI GenBank
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier: GenBank accession number assigned by NCBI. This number may be used to retrieve detailed sample and sequence information from https://www.ncbi.nlm.nih.gov/

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: CR_sequence
Attribute_Definition:

Nucleotide sequence data for the mtDNA control region locus. Blank cells indicate that sequence data from this locus was not collected for this sample.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: Nucleotide sequence data for the mtDNA control region locus.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: ND2_sequence
Attribute_Definition:

Nucleotide sequence data from the mitochondrial DNA NADH dehydrogenase 2 locus. Blank cells indicate that sequence data from this locus was not collected for this sample.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain:

Nucleotide sequence data from the mitochondrial DNA NADH dehydrogenase 2 locus.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Hawaiian Coot (Fulica alai) and Hawaiian Gallinule (Gallinula galeata sandvicensis) Microsatellite and Mitochondrial DNA Data, 2014-2016, Oahu, Kauai, and Molokai, Hawaii

Metadata: