Citation:
Citation_Information:
Originator: Van Hemert, C.R. (ORCID: 0000-0002-6858-7165)
Originator: Spivey, T.J. (ORCID: 0000-0003-2735-2770)
Originator: Uher-Koch, B.D. (ORCID: 0000-0002-1885-0260)
Originator: Atwood, T.C. (ORCID: 0000-0001-6708-1085)
Originator: Sinnett, D.R.
Originator: Meixell, B.W. (ORCID: 0000-0002-6738-0349)
Originator: Hupp, J.W. (ORCID: 0000-0002-6439-3910)
Originator: Jiang, K.
Originator: Adams, L.G. (ORCID: 0000-0001-6212-2896)
Originator: Gustine, D.D. (ORCID: 0000-0003-1087-1937)
Originator: Ramey, A.M. (ORCID: 0000-0002-3601-8400)
Originator: Wan, X.
Publication_Date: 20181219
Title:
Serological Data on Influenza A from Birds and Mammals on the Arctic Coastal Plain of Northern Alaska, 2011-2017
Geospatial_Data_Presentation_Form: tabular digital data
Publication_Information:
Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center
Other_Citation_Details:
Van Hemert, C.R., Spivey, T.J.,Uher-Koch, B.D., Atwood, T.C., Sinnett, D.R., Meixell, B.W., Hupp, J.W., Jiang, K., Adams, L.G., Gustine, D.D., Ramey, A.M., Wan, X-F., 2018, Serological data on influenza A from birds and mammals on the Arctic Coastal Plain of northern Alaska, 2011-2017: U.S. Geological Survey data release,
https://doi.org/10.5066/P9FPXQTP
Online_Linkage: https://doi.org/10.5066/P9FPXQTP
Larger_Work_Citation:
Citation_Information:
Originator: U.S. Geological Survey, Alaska Science Center
Publication_Date: 2015
Title: USGS Changing Arctic Ecosystems: cross-cutting science theme
Geospatial_Data_Presentation_Form: website
Series_Information:
Series_Name: Alaska Science Portal
Issue_Identification: 356
Publication_Information:
Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center
Other_Citation_Details:
This is a link to the broader USGS Alaska Science Center research project supported by these data. Users will find a description of the research project and links to associated reports, publications, and data products.
Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=356
Description:
Abstract:
These data (in two spreadsheets) are the results of screening for influenza A viruses (IAV) in blood from wild animals that utilize the Arctic region of Alaska. 758 blood samples from nine wildlife species (3 mammal, 6 waterbird) were collected in Arctic Alaska, 2011-2017. Two different tests were used and the results are presented in separate spreadsheets. All blood samples were screened for IAV antibodies using a blocking enzyme-linked immunosorbent assay (bELISA). A subsample of 63 blood samples were screened by hemagglutination inhibition (HI) assays to identify hemagglutinin (HA) subtype-specific antibodies for comparison among taxa.
Purpose:
These data provided the basis for a study to: 1) determine seroprevalence of IAVs in sympatric-nesting geese and loons; 2) evaluate whether mammals in the same region are exposed to IAVs; and 3) identify potential sources of exposure based on subtype-specific IAV antibodies detected in birds and mammals.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 201107
Ending_Date: 201704
Currentness_Reference: observed
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Description_of_Geographic_Extent:
Arctic Alaska including the Brooks Range and the Arctic Coastal Plain from the Canadian border west to Utqiagvik.
Bounding_Coordinates:
West_Bounding_Coordinate: -157.3074
East_Bounding_Coordinate: -141.3817
North_Bounding_Coordinate: 72.0601
South_Bounding_Coordinate: 67.0167
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC199
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: biota
Theme:
Theme_Keyword_Thesaurus: NASA GCMD Earth Science Keywords
Theme_Keyword: Earth Science
Theme_Keyword: Biological Classification
Theme_Keyword: Animals/Vertebrates
Theme_Keyword: Birds
Theme_Keyword: Ducks/Geese/Swans
Theme_Keyword: Loons
Theme_Keyword: Mammals
Theme_Keyword: Even-toed Ungulates
Theme_Keyword: Deer/Moose
Theme_Keyword: Carnivores
Theme_Keyword: Dogs/Foxes/Wolves
Theme_Keyword: Bears
Theme_Keyword: Viruses
Theme_Keyword: Biosphere
Theme_Keyword: Ecological Dynamics
Theme_Keyword: Species/Population Interactions
Theme:
Theme_Keyword_Thesaurus: USGS Biocomplexity Thesaurus
Theme_Keyword: Birds
Theme_Keyword: Aquatic Birds
Theme_Keyword: Waterfowl
Theme_Keyword: Mammals
Theme_Keyword: Ungulates
Theme_Keyword: Canidae
Theme_Keyword: Bears
Theme_Keyword: Viral Diseases
Theme_Keyword: Influenza
Theme:
Theme_Keyword_Thesaurus: USGS Thesaurus
Theme_Keyword: Life sciences
Theme_Keyword: Pathology
Theme_Keyword: Health and disease
Theme_Keyword: Wildlife disease
Theme:
Theme_Keyword_Thesaurus: NIH MeSH Keywords Thesaurus
Theme_Keyword: Diagnosis
Theme_Keyword: Immunologic Techniques
Theme_Keyword: Enzyme-Linked Immunosorbent Assay
Theme_Keyword: Hemagglutination Inhibition Tests
Theme_Keyword: Virus Diseases
Theme_Keyword: Respiratory Tract Infections
Theme_Keyword: Influenza A Virus
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: Black Brant
Theme_Keyword: Greater White-fronted Goose
Theme_Keyword: Lesser Snow Goose
Theme_Keyword: Pacific Loon
Theme_Keyword: Yellow-billed Loon
Theme_Keyword: Red-throated Loon
Theme_Keyword: Caribou
Theme_Keyword: Arctic Fox
Theme_Keyword: Polar Bear
Theme_Keyword: IAV
Place:
Place_Keyword_Thesaurus: USGS Geographic Names Information System
Place_Keyword: State of Alaska
Place_Keyword: North Slope
Place_Keyword: Chipp River
Place_Keyword: Beaufort Sea
Place_Keyword: Chandalar Lake
Place_Keyword: Colville River Delta
Place_Keyword: Utqiagvik
Place_Keyword: Lonely Air Station
Place_Keyword: Ackerman Lake
Place_Keyword: Indian Creek
Place_Keyword: Robert Creek
Place_Keyword: Tobin Creek
Place_Keyword: Tobin Pass
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: Multiple Species
Taxonomic_Keywords: Animals
Taxonomic_Keywords: Vertebrates
Taxonomic_Keywords: Birds
Taxonomic_Keywords: Black Brant
Taxonomic_Keywords: Greater White-fronted Goose
Taxonomic_Keywords: Lesser Snow Goose
Taxonomic_Keywords: Pacific Loon
Taxonomic_Keywords: Yellow-billed Loon
Taxonomic_Keywords: Red-throated Loon
Taxonomic_Keywords: Mammals
Taxonomic_Keywords: Caribou
Taxonomic_Keywords: Arctic Fox
Taxonomic_Keywords: Polar Bear
Taxonomic_Keywords: Viruses
Taxonomic_Keywords: Influenza A Virus
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator: Integrated Taxonomic Information System
Publication_Date: Unknown
Title: Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: database
Series_Information:
Series_Name: ITIS
Issue_Identification:
TSN 175011, 175029, 175020, 174474, 174475, 174470, 622025, 180542, 180701
Publication_Information:
Publication_Place: online
Publisher: ITIS-North America
Other_Citation_Details:
Taxonomic details for birds and mammals were retrieved July 2, 2018, from the Integrated Taxonomic Information System on-line database:
http://www.itis.gov
Online_Linkage: https://www.itis.gov
Classification_System_Modifications:
ITIS currently lists Snow Geese in the genus Chen. However, the most current taxonomic designation by the American Ornithological Society's (AOU) Check-list of North American Birds lists Snow Geese in the genus Anser. Here, we follow the current AOU designation as described in: Chesser, R.T., Burns, K.J., Cicero, C., Dunn, J.L., Kratter, A.W., Lovette, I.J., Rasmussen, P.C., Remsen, J.V., Jr., Rising, J.D., Stotz, D.F., Winker, K. 2017. Fifty-eighth supplement to the American Ornithological Society's Check-list of North American Birds. The Auk:134(3)751-773. doi:10.1642/AUK-17-72.1.
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator: International Committee on Taxonomy of Viruses (ICTV)
Publication_Date: Unknown
Title: International Committee on Taxonomy of Viruses
Geospatial_Data_Presentation_Form: database
Publication_Information:
Publication_Place: online
Publisher: International Committee on Taxonomy of Viruses
Other_Citation_Details:
Taxonomic details for influenza A virus were retrieved 22-Oct-2018, from the International Committee on Taxonomy of Viruses online database
https://talk.ictvonline.org/
Online_Linkage: https://talk.ictvonline.org/
Taxonomic_Procedures:
Vertebrate species were identified by skilled observers in the field based on general appearance of feathers and plumage, fur and pelage, behavior, and vocalization. Influenza A viruses were identified by the successful amplification of an RNA influenza A matrix gene-target using real-time reverse transcriptase polymerase chain reaction (rRT-PCR).
Taxonomic_Completeness:
Taxonomy is complete for all samples. No voucher specimens were collected.
Taxonomic_Classification:
Taxon_Rank_Name: Life
Taxon_Rank_Value: Life
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Bilateria
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Deuterostomia
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Taxonomic_Classification:
Taxon_Rank_Name: Infraphylum
Taxon_Rank_Value: Gnathostomata
Taxonomic_Classification:
Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Applicable_Common_Name: Birds
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Anseriformes
Applicable_Common_Name: Waterfowl
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Anatidae
Applicable_Common_Name: Ducks
Applicable_Common_Name: Geese
Applicable_Common_Name: Swans
Taxonomic_Classification:
Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Anserinae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Branta
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Branta bernicla
Applicable_Common_Name: Brant Goose
Applicable_Common_Name: Brent Goose
Applicable_Common_Name: Brant
Applicable_Common_Name: TSN: 175011
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Anser
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anser caerulescens
Applicable_Common_Name: Snow Goose
Applicable_Common_Name: TSN: 175029
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anser albifrons
Applicable_Common_Name: Greater White-fronted Goose
Applicable_Common_Name: TSN: 175020
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Gaviiformes
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Gaviidae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Gavia
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Gavia stellata
Applicable_Common_Name: Red-throated Loon
Applicable_Common_Name: Red-throated Diver
Applicable_Common_Name: TSN 174474
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Gavia pacifica
Applicable_Common_Name: Pacific Loon
Applicable_Common_Name: Pacific Diver
Applicable_Common_Name: TSN 174475
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Gavia adamsii
Applicable_Common_Name: Yellow-billed Loon
Applicable_Common_Name: White-billed Diver
Applicable_Common_Name: TSN 174470
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Mammalia
Applicable_Common_Name: mammals
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Theria
Taxonomic_Classification:
Taxon_Rank_Name: Infraclass
Taxon_Rank_Value: Eutheria
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Carnivora
Applicable_Common_Name: carnivores
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Caniformia
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Canidae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Vulpes
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Vulpes lagopus
Applicable_Common_Name: Arctic Fox
Applicable_Common_Name: TSN: 622025
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Ursidae
Applicable_Common_Name: bears
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Ursus
Applicable_Common_Name: bears
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Ursus maritimus
Applicable_Common_Name: Polar Bear
Applicable_Common_Name: TSN: 180542
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Artiodactyla
Applicable_Common_Name: artiodactyls
Applicable_Common_Name: even-toed ungulates
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Cervidae
Applicable_Common_Name: cervids
Taxonomic_Classification:
Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Capreolinae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Rangifer
Applicable_Common_Name: caribou
Applicable_Common_Name: reindeer
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Rangifer tarandus
Applicable_Common_Name: reindeer
Applicable_Common_Name: caribou
Applicable_Common_Name: TSN: 180701
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: viruses
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Negarnaviricota
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Polyploviricotina
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Insthoviricetes
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Articulavirales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Orthomyxoviridae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Alphainfluenzavirus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Influenza A virus
Access_Constraints: None
Use_Constraints:
It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications that reference this dataset.
Point_of_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA
Contact_Voice_Telephone: (907)786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Data_Set_Credit:
Hemagglutination inhibition assays were conducted at the College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.
Cross_Reference:
Citation_Information:
Originator: Van Hemert, C.R. (ORCID: 0000-0002-6858-7165)
Originator: Spivey, T.J. (ORCID: 0000-0003-2735-2770)
Originator: Uher-Koch, B.D. (ORCID: 0000-0002-1885-0260)
Originator: Atwood, T.C. (ORCID: 0000-0001-6708-1085)
Originator: Sinnett, D.R.
Originator: Meixell, B.W. (ORCID: 0000-0002-6738-0349)
Originator: Hupp, J.W. (ORCID: 0000-0002-6439-3910)
Originator: Jiang, K.
Originator: Adams, L.G. (ORCID: 0000-0001-6212-2896)
Originator: Gustine, D.D. (ORCID: 0000-0003-1087-1937)
Originator: Ramey, A.M. (ORCID: 0000-0002-3601-8400)
Originator: Wan, X.
Publication_Date: 2019
Title:
Survey of Arctic Alaskan wildlife for influenza A antibodies: limited evidence for exposure of mammals
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: Journal of Wildlife Diseases
Issue_Identification: 55(2):387-398
Publication_Information:
Publication_Place: online
Publisher: Wildlife Disease Association
Other_Citation_Details:
Van Hemert, C.R., Spivey, T.J., Uher-Koch, B.D., Atwood, T.C., Sinnett, D.R., Meixell, B.W., Hupp, J.W., Jiang, K., Adams, L.G., Gustine, D.D., Ramey, A.M., Wan, X. 2019. Survey of arctic Alaskan wildlife for influenza A antibodies: limited evidence for exposure of mammals. Journal of Wildlife Diseases 55(2):387-398 doi:10.7589/2018-05-128
Online_Linkage: https://doi.org/10.7589/2018-05-128