Entity_Type:
Entity_Type_Label:
bristleThighedCurlew_captureMorphologyGenetics_oahu_tibbitts_2012_2014
Entity_Type_Definition:
Table of capture, banding, morphology, and genetic data for Bristle-thighed curlews (Numenius tahitiensis) captured between 2012 and 2014 on the James Campbell National Wildlife Refuge, O'ahu, Hawaii. Presented in a Comma Separated Value (CSV) formatted table.
Entity_Type_Definition_Source: Author defined
Attribute:
Attribute_Label: Capture_date
Attribute_Definition: Date that bird was captured
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 7-Feb-2012
Range_Domain_Maximum: 18-Nov-2014
Attribute_Units_of_Measure: Date (DD-MM-YYYY)
Attribute:
Attribute_Label: Flag color
Attribute_Definition: Color of tarsal flag band.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Black
Enumerated_Domain_Value_Definition: Black colored tarsal flag band.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Green
Enumerated_Domain_Value_Definition: Green colored tarsal flag band.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: none
Enumerated_Domain_Value_Definition: No tarsal flag band.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Flag code
Attribute_Definition:
Unique code of tarsal flag band. Each flag has a unique numeric, alpha or alpha-numeric code engraved onto the plastic band.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Unrepresentable_Domain:
Numeric codes: 13 to 91 (non-inclusive of all numbers). Alpha codes: AD to RW (non-inclusive of all combinations). Alpha-numeric codes: K7 to U7 (non-inclusive of all combinations). Blank field indicates no flag put on bird.
Attribute:
Attribute_Label: Satellite transmitter
Attribute_Definition:
Column listing whether each bird was instrumented with a satellite transmitter.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Yes
Enumerated_Domain_Value_Definition: Bird was instrumented with a satellite transmitter.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: No
Enumerated_Domain_Value_Definition: Bird was not instrumented with a satellite transmitter.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Capture type
Attribute_Definition:
Column listing whether bird was captured only once (captured), more than once (recaptured), or resighted only (resight).
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Capture
Enumerated_Domain_Value_Definition: Bird was captured only once.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Recapture
Enumerated_Domain_Value_Definition: Bird was captured more than once.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Resight
Enumerated_Domain_Value_Definition:
Bird was resighted with binoculars or spotting scope on the study area, but not captured.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Band_ID
Attribute_Definition:
Unique identification code used to mark individual birds. Composed of the final 5 digits stamped on a metal leg band issued by the U.S. Geological Survey, Bird Banding Lab, Patuxent Wildlife Research Center, Patuxent, Maryland. The initial capture and banding event and associated band number are reported to the USGS Bird Banding Laboratory in the year of banding and all banding and encounter data can be obtained from the Bird Banding Laboratory.
Attribute_Definition_Source: USGS Bird Banding Laboratory https://www.pwrc.usgs.gov/bbl/
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 03751
Range_Domain_Maximum: 06071
Attribute_Units_of_Measure: band number
Attribute:
Attribute_Label: Band combination
Attribute_Definition:
Combination of metal and color bands on left and right legs of captured bird. Band options include metal band, color bands, and uniquely coded flag band (shown by code). Combination is ordered as follows: upper left leg, lower left leg : upper right leg, lower right leg. A backslash (/) indicates upper vs. lower leg. A comma (,) indicates different band colors on the upper or lower leg. A colon (:) separates left leg band combinations from right leg bands. An underscore (_) denotes an unmarked upper or lower leg.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Unrepresentable_Domain: See Attribute definition.
Attribute:
Attribute_Label: Sex
Attribute_Definition:
Sex of the sampled bird as determined by the CHD molecular sexing protocol (Griffiths et al 1998). In cases where molecular sexing was not possible, we used bill thickness and overall bill shape to assign sex to birds since females have thicker and straighter bills than males (USGS, unpublished data).
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: F
Enumerated_Domain_Value_Definition: Female
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: M
Enumerated_Domain_Value_Definition: Male
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Age
Attribute_Definition:
Age (year Class) is represented as age codes specified by the. Age is determined by feather plumage coloration, pattern, or feather wear of specific feather tracks.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: SY
Enumerated_Domain_Value_Definition:
Second year. A bird known to have hatched in the year preceding the year of banding, now in its second year of life.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: TY
Enumerated_Domain_Value_Definition:
Third year. A bird known to have hatched two years prior to the year of banding, now in its third year of life.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: ATY
Enumerated_Domain_Value_Definition:
After third year. A bird known to have hatched more than two years prior to the year of banding, now in at least its fourth year of life.
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Weight
Attribute_Definition:
Weight of the captured bird in grams. Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 345
Range_Domain_Maximum: 626
Attribute_Units_of_Measure: grams
Attribute:
Attribute_Label: Flat wing
Attribute_Definition:
Measurement of the wing length or wing chord, in which a ruler with a perpendicular stop at zero is inserted under the wing and the bend of the wing or "shoulder" is pressed against the stop. Gentle pressure with a finger is then used to push the bend of the wing flat and the total length is measured in millimeters. Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 209
Range_Domain_Maximum: 272
Attribute_Units_of_Measure: mm
Attribute:
Attribute_Label: Diagonal tarsus
Attribute_Definition:
The diagonal length of the tarsometatarsus bone only, along the outside edge. Sometimes referred to as "tarsus bone." Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 53.4
Range_Domain_Maximum: 63.8
Attribute_Units_of_Measure: mm
Attribute:
Attribute_Label: Exposed bill
Attribute_Definition:
Exposed bill or exposed culmen. The diagonal length of the upper mandible from the bill nail to the proximal tip of the posterior lateral extension of the upper mandible, in front of the eyes. Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 78.1
Range_Domain_Maximum: 106.1
Attribute_Units_of_Measure: mm
Attribute:
Attribute_Label: Head length
Attribute_Definition:
Also referred to as total head. The length of the skull from the external occipital ridge (at the back of the head) to the distal tip of the bill nail (including skin and feathers). Also, the longest dimension of the head, with tips of the calipers anchored on the ridge and nail at right angles to the head. Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 117.9
Range_Domain_Maximum: 151.0
Attribute_Units_of_Measure: mm
Attribute:
Attribute_Label: Curved bill
Attribute_Definition:
Length of entire bill measured along its upper arc from feather culmen boundary in front of the eyes at the top of the upper mandible, down the bill to the bill tip. Measurement is made with a flexible tape. Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 79
Range_Domain_Maximum: 110
Attribute_Units_of_Measure: mm
Attribute:
Attribute_Label: Bill thickness
Attribute_Definition:
A dorsal-ventral measure of the two mandibles pressed gently together. Measurement is taken approximately 10 mm from bill tip. Blank cells indicate attribute was not measured.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 2.90
Range_Domain_Maximum: 5.50
Attribute_Units_of_Measure: mm
Attribute:
Attribute_Label: 4A11_allele1
Attribute_Definition:
Microsatellite allele one from the 4a11 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 165
Range_Domain_Maximum: 171
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: 4a11_allele2
Attribute_Definition:
Microsatellite allele two from the 4a11 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 167
Range_Domain_Maximum: 173
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: CALP2_allele1
Attribute_Definition:
Microsatellite allele one from the CALP2 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 140
Range_Domain_Maximum: 158
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: CALP2_allele2
Attribute_Definition:
Microsatellite allele two from the CALP2 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 140
Range_Domain_Maximum: 160
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: CALP5_allele1
Attribute_Definition:
Microsatellite allele one from the CALP5locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 131
Range_Domain_Maximum: 133
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: CALP5_allele2
Attribute_Definition:
Microsatellite allele two from the 4a11 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 131
Range_Domain_Maximum: 133
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: NUT3_allele1
Attribute_Definition:
Microsatellite allele one from the NUT3 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 115
Range_Domain_Maximum: 133
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: NUT3_allele2
Attribute_Definition:
Microsatellite allele two from the NUT3 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 127
Range_Domain_Maximum: 137
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: NUT10_allele1
Attribute_Definition:
Microsatellite allele one from the NUT10 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 132
Range_Domain_Maximum: 138
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: NUT10_allele2
Attribute_Definition:
Microsatellite allele two from the NUT10 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 138
Range_Domain_Maximum: 138
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: NUT18_allele1
Attribute_Definition:
Microsatellite allele one from the NUT18 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 151
Range_Domain_Maximum: 167
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: NUT18_allele2
Attribute_Definition:
Microsatellite allele two from the NUT18 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 157
Range_Domain_Maximum: 173
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: RUFF6_allele1
Attribute_Definition:
Microsatellite allele one from the RUFF6 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 128
Range_Domain_Maximum: 148
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: RUFF6_allele2
Attribute_Definition:
Microsatellite allele two from the RUFF6 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 128
Range_Domain_Maximum: 148
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: HRU2_allele1
Attribute_Definition:
Microsatellite allele one from the HRU2 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 154
Range_Domain_Maximum: 156
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: HRU2_allele2
Attribute_Definition:
Microsatellite allele two from the HRU2 locus. Blank cells indicate that the sample was not run for this locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
The code "np" in a cell of the data set refers to a sample that did not amplify or show any product ("no product").
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 154
Range_Domain_Maximum: 158
Attribute_Units_of_Measure: base pairs
Attribute:
Attribute_Label: mtDNA CR
Attribute_Definition:
Designation of the each unique Mitochondrial Control Region haplotype. Blank cells indicate that no haplotype was designated.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 2
Range_Domain_Maximum: 20
Attribute_Units_of_Measure: haplotype number
Attribute:
Attribute_Label: GenBank Accession
Attribute_Definition:
Unique identifier of mitochondrial DNA control region sequence. GenBank accession number assigned by National Center for Biotechnology Information. Blank cells indicate that no GenBank accession number was assigned. This number may be used to retrieve detailed sample and sequence information from
https://www.ncbi.nlm.nih.gov/genbank
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Unrepresentable_Domain: GenBank accession number: KM218924–KM218975 and KX372272