Walrus Haulout and In-water Activity Levels Relative to Sea Ice Availability in the Chukchi Sea: 2008-2014

Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: C. V. Jay
Originator: R. L. Taylor
Originator: A. S. Fischbach
Originator: W. S. Beatty
Publication_Date: 20170412
Title:
Walrus Haulout and In-water Activity Levels Relative to Sea Ice Availability in the Chukchi Sea: 2008-2014
Geospatial_Data_Presentation_Form: tabular digital data
Publication_Information:
Publication_Place: U.S. Geological Survey, Alaska Science Center
Publisher: U.S. Geological Survey, Alaska Science Center
Other_Citation_Details:
Please cite this dataset as: Jay, C. V., Taylor R. L., Fischbach, A. S.. 2017. Walrus Haulout and In-water Activity Levels Relative to Sea Ice Availability in the Chukchi Sea: 2008-2014: U.S. Geological Survey data release, http://dx.doi.org/10.5066/F7XD0ZTG.
Online_Linkage: http://dx.doi.org/10.5066/F7XD0ZTG
Online_Linkage: https://alaska.usgs.gov/science/biology/walrus
Larger_Work_Citation:
Citation_Information:
Originator: Chadwick Jay
Publication_Date: Unknown
Title:
Understanding and Forecasting the Response of Pacific Walrus Populations to a Rapidly Diminishing Sea Ice Environment
Geospatial_Data_Presentation_Form: Website
Publication_Information:
Publication_Place: U.S. Geological Survey, Alaska Science Center
Publisher: U.S. Geological Survey, Alaska Science Center
Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=96
Description:
Abstract:
An animal’s energetic costs are dependent on the amount of time it allocates to various behavioral activities. For Arctic pinnipeds, the time allocated to active and resting behaviors could change with future reductions in sea ice cover and longer periods of open water. The Pacific walrus (Odobenus rosmarus divergens) is a large Arctic pinniped that rests on sea ice or land between foraging trips to feed on the seafloor. This dataset contains behavioral data collected from 216 radio-tagged adult female walruses instrumented in the Chukchi Sea (2008–2014) that formed the basis of a Bayesian generalized linear mixed effects model that investigated probability that a walrus was in water foraging, in water not foraging, or hauled out, as a function of environmental covariates. The data are structured such that each line represents an hour of behavior collected during every third hour of the UTC day (hours 0 through 21), which was associated with temperature and wind metrics derived from the North American Regional Reanalysis dataset, as well as an index of the daily availability of sea ice based on the daily National Ice Center's Marginal Ice Zone product and an index of the availability of land. Each record presents the walrus behavior recorded during the record's hour, the previous hour, and the subsequent hour.
Purpose:
Examine walrus haulout and foraging behavior as a function of proximity to resting substrates and prey biomass, as adjusted by autocorrelation and weather variables.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 20080604
Beginning_Time: 000000
Ending_Date: 20141020
Ending_Time: 115959
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Description_of_Geographic_Extent: Northeast Chukchi Sea
Bounding_Coordinates:
West_Bounding_Coordinate: -174.40000
East_Bounding_Coordinate: -156.88000
North_Bounding_Coordinate: 72.84000
South_Bounding_Coordinate: 66.61000
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC97
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: Biota
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: haulout
Theme:
Theme_Keyword_Thesaurus: USGS Biocomplexity Thesaurus
Theme_Keyword: activity
Theme_Keyword: behavior
Theme_Keyword: forage
Theme_Keyword: foraging behavior
Theme_Keyword: sea ice
Theme_Keyword: weather
Place:
Place_Keyword_Thesaurus: Geographic Names Information System
Place_Keyword: Chukchi Sea
Stratum:
Stratum_Keyword_Thesaurus: None
Stratum_Keyword: Marine
Temporal:
Temporal_Keyword_Thesaurus: None
Temporal_Keyword: Summer
Temporal_Keyword: Autumn
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: Integrated Taxonomic Information System
Taxonomic_Keywords: Walrus
Taxonomic_Keywords: Pacific walrus
Taxonomic_Keywords: Odobenus rosmarus divergens
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Mammalia
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Carnivora
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Odobenidae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Odobenus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Odobenus rosmarus
Applicable_Common_Name: Walrus
Access_Constraints: None
Use_Constraints:
It is requested that the authors and USGS Alaska Science Center be cited for any subsequent publications that reference this dataset. It is strongly recommended that careful attention be paid to the contents of the metadata file associated with these data to evaluate data set limitations, restrictions or intended use. It is the responsibility of the user to use the data appropriately and consistent with the limitations of the data in general and these data in particular.
Cross_Reference:
Citation_Information:
Originator: C. V. Jay
Originator: R. L. Taylor
Originator: A. S. Fischbach
Originator: M. S. Udevitz
Originator: W. S. Beatty
Publication_Date: 2017
Title:
Walrus haulout and in-water activity levels relative to sea ice availability in the Chukchi Sea
Geospatial_Data_Presentation_Form: journal article
Publication_Information:
Publication_Place: Journal of Mammalogy
Publisher: American Society of Mammalogists
Other_Citation_Details: 98:386-396
Online_Linkage: http://doi.org/10.1093/jmammal/gyw195
Data_Quality_Information:
Logical_Consistency_Report: N/A
Completeness_Report:
A complete description of telemetry, covariate collecting, and covariate processing can be found in the companion manuscript for this dataset.
Lineage:
Methodology:
Methodology_Type: Lab
Methodology_Description:
This methodology contributed an Argos location filter. Moderating Argos location errors in animal tracking data
Methodology_Citation:
Citation_Information:
Originator: D. C. Douglas
Originator: R. Weinzierl
Originator: S. C. Davidson
Originator: R. Kays
Originator: M. Wikelski
Originator: G. Bohrer
Publication_Date: 2012
Title: Moderating Argos location errors in animal tracking data
Geospatial_Data_Presentation_Form: journal article
Publication_Information:
Publication_Place: Methods in Ecology and Evolution
Publisher: British Ecological Society
Other_Citation_Details: Douglas et al. 2012
Online_Linkage: http://dx.doi.org/10.1111/j.2041-210X.2012.00245.x
Methodology:
Methodology_Type: Lab
Methodology_Description:
This methodology describes how we obtained hourly behavior data from walruses using a transmitter that collected conductivity and a pressure data and relayed it through a satellite data collection system.
Methodology_Citation:
Citation_Information:
Originator: A. S. Fischbach
Originator: C. V. Jay
Publication_Date: 2016
Title:
A strategy for recovering continuous behavioral telemetry data from Pacific walruses
Geospatial_Data_Presentation_Form: journal article
Publication_Information:
Publication_Place: Wildlife Society Bulletin
Publisher: Wildlife Society
Other_Citation_Details: Fischbach and Jay 2016
Online_Linkage: http://dx.doi.org/10.1002/wsb.685
Source_Information:
Source_Citation:
Citation_Information:
Originator: W. S. Beatty
Originator: C. V. Jay
Originator: A. S. Fischbach
Originator: J. M. Grebmeier
Originator: R. L. Taylor
Originator: A. L. Blanchard
Originator: S. C. Jewett
Publication_Date: 2016
Title:
Space use of a dominant Arctic vertebrate: effects of prey, sea ice, and land on Pacific walrus resource selection
Geospatial_Data_Presentation_Form: journal article
Publication_Information:
Publication_Place: Biological Conservation
Publisher: Elsevier
Online_Linkage: http://dx.doi.org/10.1016/j.biocon.2016.08.035
Type_of_Source_Media: paper
Source_Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: Unknown
Ending_Date: Unknown
Source_Currentness_Reference: ground condition
Source_Citation_Abbreviation: Beatty et al. 2016
Source_Contribution:
The source describes the collection and interpolation of benthic biomass data.
Source_Information:
Source_Citation:
Citation_Information:
Originator: Messinger, F.
Originator: DiMego, G.
Originator: Kalnay, E.
Originator: Mitchell, K.
Publication_Date: 2016
Title: North American Regional Reanalysis
Geospatial_Data_Presentation_Form: journal article
Other_Citation_Details: Bulletin of the American Meteorological Society 87:343-360
Type_of_Source_Media: paper
Source_Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 19790101
Ending_Date: 20141020
Source_Currentness_Reference: ground condition
Source_Citation_Abbreviation: Mesinger et al. 2006
Source_Contribution:
The source documents to processing of the weather metric estimates used in the analysis.
Process_Step:
Process_Description:
We collected Argos satellite telemetry locations from a sample of 216 female walruses between 2 June 2008 and 20 October 2014.
Process_Date: Unknown
Process_Step:
Process_Description:
We filtered Argos locations with an algorithm based on spatial redundancy, movement rates, and turning angles (Douglas et al. 2012). We set the algorithm to retain (1) all standard class locations, (2) non-standard class locations within 2 km of the previous or subsequent location, and (3) remaining locations based on a distance-angle-rate filter that accepted a maximum walrus speed of 10 km/h and rejected locations at the apex of highly acute angles (RATECOEF = 25).
Process_Date: 2016
Process_Step:
Process_Description:
For analysis, we selected one Argos location for each walrus tracking day so we could associate daily behavioral intervals with environmental covariates. We selected one walrus location each day by retaining the location record(s) closest in time to local noon. If more than one location were equally close to local noon, we selected the location with the highest Argos location quality (LQ), and if they had the same LQ, we selected the location obtained before local noon. If locations of equal LQ were acquired at the same time before local noon, then we averaged the locations.
Process_Date: 2016
Process_Step:
Process_Description:
We derived chronologies of hourly haulout and foraging states of tagged walruses from data collected by a conductivity sensor and pressure transducer on the radio-tag (Fischbach and Jay 2016). Every one or two seconds (depending on the tag model and deployment year), the conductivity sensor indicated whether the tag was in or out of salt water and the pressure transducer indicated the depth of the tag. If >= 90% of the conductivity measurements within a 1-h interval indicated the tag was out of water, the walrus was considered to be hauled out during that interval. If the majority of the pressure measurements within a 1-h interval indicated the tag was > 10 m deep, the walrus was considered to be foraging during that interval.
Process_Date: 2016
Process_Step:
Process_Description:
We excluded behavioral intervals obtained within the first 24 hours after tag deployment to guard against the possibility that the tagging process altered behavior during this period. We only included data from walruses that provided = > 240 hours of continuous hourly records that were not missing two or more consecutive daily locations.
Process_Date: 2016
Process_Step:
Process_Description:
We assigned each day of walrus behavior as having land available if the daily location was within a day’s reach of land. We defined a day’s reach as the maximum distance an average walrus was likely to travel in a day, and quantified it as the 95th percentile of the distribution of movements from each daily location to the next for each walrus in the data set, averaged over individuals. From this, a day’s reach was found to be 50 km.
Process_Date: 2016
Process_Step:
Process_Description:
We assigned each day of walrus behavior as having sea ice available if the daily location was within a day’s reach of sea ice (i.e. 50 km). We assessed the presence of ice within a day’s reach using the National Ice Center’s daily Marginal Ice Zone (MIZ) product (http://www.natice.noaa.gov/products/, accessed on 5 December 2014). The Marginal Ice Zone represents regions of pack and marginal sea ice as digitally encoded geospatial polygons based on imagery from satellite-borne sensors acquired near local noon each day. Marginal ice is defined as areas with approximately 10–80% ice concentration, whereas pack ice is defined as areas with > 80% ice concentration.
Process_Date: 2016
Process_Step:
Process_Description:
We assigned each day of walrus behavior a covariate in our models to quantify the amount of potential walrus prey within a day’s reach of daily walrus locations. Details of data collection and estimating the distribution of benthic macrofaunal biomass are described in Beatty et al. (2016, Appendix A).
Source_Used_Citation_Abbreviation: Beatty et al. 2016
Process_Date: 2016
Process_Step:
Process_Description:
We characterized air temperature and wind speed coincident with walrus behavior records based on estimates available through the North American Regional Reanalysis (NARR), which provides weather metric estimates at 3 h intervals on an approximately 32.5 km by 32.5 km grid (Mesinger et al. 2006). We acquired NARR estimates of air temperature at 2 m above sea level, and wind speed at 10 m above sea level from the National Oceanic and Atmospheric Administration. (ftp://ftp.cdc.noaa.gov/Datasets/NARR/monolevel, accessed on 11 March 2015.) We assigned weather covariates to the 1-h behavioral intervals that began at the NARR time points (local hours (UTC - 11 h) of 01:00, 04:00, 07:00, 10:00, 13:00, 16:00, 19:00, 22:00) using an inverse-distance weighted interpolation of the 4 NARR spatial grid points closest to the daily walrus location. We used inverse distance weighting to interpolate weather variables because NARR data represented a continuous grid. We retained only the 1-h behavioral intervals that were assigned weather covariates. Thus, each walrus day had a maximum of 8 behavior records.
Source_Used_Citation_Abbreviation: Mesinger et al. 2006
Process_Date: Unknown
Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label: CompareBehavior.csv
Entity_Type_Definition:
Comma separated value file containing a tabulation of the data used in the statistical modeling.
Entity_Type_Definition_Source: U.S. Geological Survey
Attribute:
Attribute_Label: Wet
Attribute_Definition: 1 if walrus in water, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Attribute:
Attribute_Label: Forage
Attribute_Definition: 1 if walrus foraging, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Attribute:
Attribute_Label: LocalHour
Attribute_Definition: hour of the day in UTC-11
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1
Range_Domain_Maximum: 22
Attribute_Units_of_Measure: hour in local time, which is UTC -11
Attribute:
Attribute_Label: LagFor
Attribute_Definition: 1 if walrus foraging in previous hour, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Attribute:
Attribute_Label: LagSwm
Attribute_Definition: 1 if walrus in water during previous hour, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Attribute:
Attribute_Label: LagDry
Attribute_Definition: 1 if walrus hauled out during previous hour, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Attribute:
Attribute_Label: IndexWal
Attribute_Definition:
Integer that uniquely identifies each walrus used in the analysis
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 216
Attribute:
Attribute_Label: IndexTime
Attribute_Definition:
Integer that uniquely identifies each point in time hours since start of the telemetry data collection used in the analysis, irrespective of study year.
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1
Range_Domain_Maximum: 4564
Attribute:
Attribute_Label: SeaIce
Attribute_Definition:
1 if MIZ charted sea ice was found within a 50 km radius of the daily location, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Attribute:
Attribute_Label: WSkmh
Attribute_Definition:
Wind speed in km/h at 10 m above sea level, inverse distance weighted from 4 closest NARR points
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0.06265
Range_Domain_Maximum: 71.23129
Attribute:
Attribute_Label: TempC
Attribute_Definition:
Temperature in degrees Celcius at 10 m above sea level, inverse distance weighted from 4 closest NARR points
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: -10.8798
Range_Domain_Maximum: 15.6793
Attribute:
Attribute_Label: biomass
Attribute_Definition:
mean of kriged benthic biomass values in log(gC m^-2) within a 50 km radius
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1.074
Range_Domain_Maximum: 3.679
Attribute:
Attribute_Label: Land
Attribute_Definition:
1 if land was found within a 50 km radius of the daily location, 0 otherwise
Attribute_Definition_Source: U.S. Geological Survey
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 1
Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: AK
Postal_Code: 99508
Country: USA
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Distribution_Liability:
Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: CSV
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: http://dx.doi.org/10.5066/F7XD0ZTG
Fees: None
Metadata_Reference_Information:
Metadata_Date: 20201125
Metadata_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Chadwick Jay
Contact_Organization: U.S. Geological Survey
Contact_Position: Research Ecologist
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: AK
Postal_Code: 99508
Country: USA
Contact_Voice_Telephone: 907-786-7000
Metadata_Standard_Name:
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001.1-1999
Metadata_Time_Convention: local time

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