Eelgrass (Zostera marina) Microsatellite DNA Data; Pacific Coast of North America, 2000-2009

Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: Talbot, S.L.
Publication_Date: 201604
Title:
Eelgrass (Zostera marina) Microsatellite DNA Data; Pacific Coast of North America, 2000-2009
Geospatial_Data_Presentation_Form: spreadsheet
Series_Information:
Series_Name: none
Issue_Identification: none
Publication_Information:
Publication_Place: U.S. Geological Survey, Alaska Science Center
Publisher: U.S. Geological Survey, Alaska Science Center
Other_Citation_Details: Zostera marina Microsatellite Data
Online_Linkage: http://dx.doi.org/10.5066/F7GQ6VTK
Larger_Work_Citation:
Citation_Information:
Originator: Talbot, S.L.
Originator: Ward, D.H.
Publication_Date: 200902
Title: Status and Trends of Seagrass Populations
Geospatial_Data_Presentation_Form: web site
Series_Information:
Series_Name: none
Issue_Identification: none
Publication_Information:
Publication_Place: U.S. Geological Survey, Alaska Science Center
Publisher: U.S. Geological Survey, Alaska Science Center
Online_Linkage: http://alaska.usgs.gov/portal/project.php?project_id=377
Description:
Abstract:
This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha California. A total of 447 samples were collected comprising 401 unique individuals (genets) and 46 clones (ramets) from which 10 microsatellite DNA loci were obtained.
Purpose:
The central aim of this study is to characterize genetic structure in largely undisturbed natural populations of eelgrass along the northwestern-most Pacific coast of North America. Data from microsatellite DNA loci were used to (1) quantify levels of genetic diversity and structuring within and among natural undisturbed populations of Z. marina along the North Pacific and Bering Sea coasts of Alaska, which are geographically separated by the Alaska Peninsula; (2) test for polarity of gene flow among populations within the Eastern Bering Sea Large Marine Ecosystem and the Gulf of Alaska Large Marine Ecosystem; and (3) test for association between genetic and latitudinal gradients among populations along the Pacific coast of North America.
Supplemental_Information:
Genetic markers used are as follows: Data include fragment data from 1) 10 microsatellite DNA loci from 447 samples comprising 401 unique individuals (genets) and 46 clones (ramets) sampled from populations along the Pacific coast of North America, including Oregon (Yaquina Bay, n = 25 genets and 6 ramets) and Alaska: Saint Catherine’s Cove (n = 24 genets), Kinzarof Lagoon (n = 48 genets), Izembek Lagoon (n = 71 genets), Wide Bay (n = 33 genets), Safety Lagoon (aka Safety Sound; n = 34 genets), Unga Island (n = 6 genets and 4 ramets), Simeonof Island (n = 6 genets and 1 ramet), Nakwasina Bay (n = 30 genets), Kuskokwim Shoals in the Kuskokwim Bay (n = 29 genets and 12 ramets), Montague Island, Prince William Sound (n = 46 genets, 22 ramets), Togiak Bay (n = 49 genets, 1 ramet); and 2) 6 loci from 138 samples (genets only) collected along a latitudinal gradient from the southern portion of the species’ range (Baja California: Estero Punto Banda, n = 37; Bahia San Quintin, n = 40, Bahia Magdalena, n = 28); and the middle Pacific (California: Monterey Bay, n = 10; Washington: Shallow Bay in Puget Sound (n = 23).
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 2000
Ending_Date: 2009
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: Unknown
Spatial_Domain:
Description_of_Geographic_Extent:
Pacific Coast of North America between the tip of Baja California to north of the Seward Peninsula, Alaska
Bounding_Coordinates:
West_Bounding_Coordinate: -164.75000
East_Bounding_Coordinate: -111.800883
North_Bounding_Coordinate: 64.483
South_Bounding_Coordinate: 24.58013
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC49
Theme:
Theme_Keyword_Thesaurus: NASA GCMD Earth Science
Theme_Keyword: Biological Classification
Theme_Keyword: Plants
Theme_Keyword: Angiosperms (Flowering Plants)
Theme_Keyword: Monocots
Theme_Keyword: Seagrass
Theme:
Theme_Keyword_Thesaurus: NASA GCMD Earth Science
Theme_Keyword: Biosphere
Theme_Keyword: AquaticEcosystems
Theme_Keyword: Coastal Habitat
Theme:
Theme_Keyword_Thesaurus: NASA GCMD Earth Science
Theme_Keyword: Biosphere
Theme_Keyword: Ecological Dynamics
Theme_Keyword: Species/Population Interactions
Theme_Keyword: Evolutionary Adaptation
Theme:
Theme_Keyword_Thesaurus: U.S. Geological Survey CSA Biocomplexity Thesaurus
Theme_Keyword: Genetic Diversity
Theme_Keyword: Gene Flow
Theme_Keyword: Genetic Structure
Theme:
Theme_Keyword_Thesaurus: ISO 19115
Theme_Keyword: biota
Place:
Place_Keyword_Thesaurus: Geographic Names Information System
Place_Keyword: Yaquina Bay
Place_Keyword: Nakwasina Bay
Place_Keyword: Montague Island
Place_Keyword: Unga Island
Place_Keyword: Simeonof Island
Place_Keyword: Kinzarof Lagoon
Place_Keyword: Saint Catherine Cove
Place_Keyword: Izembek Lagoon
Place_Keyword: Togiak Bay
Place_Keyword: Safety Sound
Place_Keyword: Monterey Bay
Place_Keyword: Wide Bay
Place_Keyword: Shallow Bay
Place:
Place_Keyword_Thesaurus: None
Place_Keyword: Kuskokwim Shoals
Place:
Place_Keyword_Thesaurus: NGIA GEOnet Names Server (GNS)
Place_Keyword: Bahia Magdelena
Place_Keyword: Bahia San Quintin
Place_Keyword: Estero Punta Banda
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: plants
Taxonomic_Keywords: single species
Taxonomic_Keywords: Plantae
Taxonomic_Keywords: Magnoliophyta
Taxonomic_Keywords: Liliopsida
Taxonomic_Keywords: Najadales
Taxonomic_Keywords: Zosteraceae
Taxonomic_Keywords: Zostera
Taxonomic_Keywords: marina
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator: Integrated Taxonomic Information System
Publication_Date: Unknown
Title: Integrated Taxonomic Information System on-line database
Geospatial_Data_Presentation_Form: database
Series_Information:
Series_Name: ITIS
Issue_Identification: TSN 39074
Publication_Information:
Publication_Place: http://www.itis.gov/
Publisher: Integrated Taxonomic Information System
Other_Citation_Details:
Retrieved April 12, 2016, from the Integrated Taxonomic Information System on-line database http://www.itis.gov
Online_Linkage:
http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=39074
Classification_System_Modifications: None
Taxonomic_Procedures: None
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Plantae
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Viridplantae
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Streptophyta
Taxonomic_Classification:
Taxon_Rank_Name: Superdivision
Taxon_Rank_Value: Embryophyta
Taxonomic_Classification:
Taxon_Rank_Name: Division
Taxon_Rank_Value: Tracheophyta
Taxonomic_Classification:
Taxon_Rank_Name: Subdivision
Taxon_Rank_Value: Spermatophytina
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Magnoliopsida
Taxonomic_Classification:
Taxon_Rank_Name: Superorder
Taxon_Rank_Value: Lilianae
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Alismatales
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Zosteraceae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Zostera
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Zostera marina L.
Applicable_Common_Name: eelgrass, seawrack
Access_Constraints: None
Use_Constraints:
If you use these data in a publication, presentation, or other product please use the citation below to credit the authors for their contribution to your work:
Talbot SL, Sage GK, Rearick JR, Fowler MC, Muñiz-Salazar R, Baibak B, et al. (2016) The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska. PLoS ONE 11(4): e0152701. doi:10.1371/journal.pone.0152701
Microsatellite data from this dataset cannot be combined with data generated outside the Alaska Science Center without molecular size calibration between laboratories. It is the sole responsibility of the user to use the data in an appropriate manner consistent with the limitations of the data, in general, and these data, in particular.
Point_of_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Data_Set_Credit:
U.S. Geological Survey, Alaska Science Center, Anchorage, AK
Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California
Friday Harbor Laboratories, University of Washington, Friday Harbor, WA
Biological Sciences, Humboldt State University, Arcata, CA
Cross_Reference:
Citation_Information:
Originator: Talbot, S.L.
Originator: Sage, G.K.
Originator: Rearick, J.R.
Originator: Fowler, M.C.
Originator: Muniz-Salazar, R.
Originator: Baibak, B.
Originator: Wyllie-Echeverria, S.
Originator: Cabello-Pasini, A.
Originator: Ward, D.H.
Publication_Date: 20160423
Title:
The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: PLoS One
Issue_Identification: 11(4): e0152701
Publication_Information:
Publication_Place: online
Publisher: PLoS, San Francisco, CA
Other_Citation_Details: http://journals.plos.org/plosone/
Online_Linkage: http://dx.doi.org/10.1371/journal.pone.0152701
Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
Polymerase chain reaction (PCR) amplification and electrophoresis followed protocols described in Sonsthagen et al. (2004; Sonsthagen, S.A., Talbot, S.L., and White, C.M. 2004. Gene flow and genetic characterization of Northern Goshawks breeding in Utah. Condor 106:826–836.).
Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel.
For quality control purposes, 10% of the samples were extracted, amplified, and genotyped in duplicate. We observed sterile technique in the handling of all DNA, and all procedures were performed with positive and negative controls to provide evidence of replication without contamination.
Logical_Consistency_Report:
Data and metadata were peer-reviewed following U.S. Geological Survey Fundamental Science Practices and U.S. Geological Survey Data Management Policy for logical consistency.
See publication: "The Structure of Genetic Diversity in Eelgrass (Zostera marina L.) along the North Pacific and Bering Sea Coasts of Alaska" published in the journal PLoS One for more information.
Completeness_Report:
Users are advised to read the rest of the metadata record carefully for additional details, particularly the Entity and Attribute definitions for specifics on each entity and data within those entities. Data omissions for particular entities are explained in the Entity and Attribute definitions.
Blank data indicates no data were collected for a particular attribute. Attribute data equaling “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).
Positional_Accuracy:
Horizontal_Positional_Accuracy:
Horizontal_Positional_Accuracy_Report: No formal positional accuracy tests were conducted
Lineage:
Methodology:
Methodology_Type: Lab
Methodology_Description:
Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).
Methodology_Citation:
Citation_Information:
Originator: Sonsthagen, S.A.
Originator: Talbot, S.L.
Originator: White, C.M.
Publication_Date: 2004
Title:
Gene flow and genetic characterization of Northern Goshawks breeding in Utah.
Geospatial_Data_Presentation_Form: journal article
Other_Citation_Details:
Sonsthagen et al. (2004; Sonsthagen, S.A., Talbot, S.L., and White, C.M. 2004. Gene flow and genetic characterization of Northern Goshawks breeding in Utah. Condor 106:826–836.).
Online_Linkage:
http://www.jstor.org/stable/3247787?seq=1#page_scan_tab_contents
Process_Step:
Process_Description: No process steps have been described for this data set
Process_Date: Unknown
Spatial_Data_Organization_Information:
Direct_Spatial_Reference_Method: Point
Spatial_Reference_Information:
Horizontal_Coordinate_System_Definition:
Geographic:
Latitude_Resolution: 0.001
Longitude_Resolution: 0.001
Geographic_Coordinate_Units: Decimal degrees
Geodetic_Model:
Horizontal_Datum_Name: World Geodetic System of 1984
Ellipsoid_Name: World Geodetic System of 1984
Semi-major_Axis: 6378137
Denominator_of_Flattening_Ratio: 298.25722210088
Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label:
Eelgrass (Zostera marina) Microsatellite DNA Data; Pacific Coast of North America 2000-2009
Entity_Type_Definition: Data set
Entity_Type_Definition_Source: Author defined
Attribute:
Attribute_Label: Sample_Id
Attribute_Definition:
This is a U.S. Geological Survey, Alaska Science Center, Molecular Ecology Laboratory name that uniquely identifies each sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Unrepresentable_Domain:
This is a unique alphanumeric code incorporating population and individual identifiers.
Attribute:
Attribute_Label: Clonality
Attribute_Definition:
This the clonal status of each sample. Because eelgrass can reproduce vegetatively, multiple samples may represent the same genetically unique individual. Here, the term Ramet is used to describe a sample that is a clone of unique individual (genet) already represented in the dataset.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Genet
Enumerated_Domain_Value_Definition: Unique individual
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Ramet
Enumerated_Domain_Value_Definition:
This represents a sample that is a clone of unique individual (genet).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Sample_Country
Attribute_Definition: This is the country in which the sample was collected.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA
Enumerated_Domain_Value_Definition: United States of America
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Mexico
Enumerated_Domain_Value_Definition: Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute:
Attribute_Label: Sample_State
Attribute_Definition: This is the state in which the sample was collected.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: California
Enumerated_Domain_Value_Definition: California, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Alaska
Enumerated_Domain_Value_Definition: Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Baja California
Enumerated_Domain_Value_Definition: Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Washington
Enumerated_Domain_Value_Definition: Washington, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Oregon
Enumerated_Domain_Value_Definition: Oregon, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute:
Attribute_Label: Sample_Location
Attribute_Definition:
This is the general geographic area at which the sample was collected.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Monterey Bay
Enumerated_Domain_Value_Definition: Monterey Bay, California, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Izembek Lagoon
Enumerated_Domain_Value_Definition: Izembek Lagoon, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Simeonof Island
Enumerated_Domain_Value_Definition: Simeonof Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Bahia Magdelena
Enumerated_Domain_Value_Definition: Bahia Magdelena, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Bahia San Quintin
Enumerated_Domain_Value_Definition: Bahia San Quintin, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Estero Punto Banda
Enumerated_Domain_Value_Definition: Estero Punta Banda, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Kinzarof Lagoon
Enumerated_Domain_Value_Definition: Kinzarof Lagoon, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Kuskokwim Shoals
Enumerated_Domain_Value_Definition: Kuskowkim Shoals in Kuskokwim Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Nakwasina Bay
Enumerated_Domain_Value_Definition: Nakwasina Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Montague Island
Enumerated_Domain_Value_Definition: Montague Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Shallow Bay
Enumerated_Domain_Value_Definition: Shallow Bay, Puget Sound, Washington, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Saint Catherine Cove
Enumerated_Domain_Value_Definition: Saint Catherine Cove, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Safety Lagoon
Enumerated_Domain_Value_Definition: Safety Sound, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Togiak Bay
Enumerated_Domain_Value_Definition: Togiak Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Unga Island
Enumerated_Domain_Value_Definition: Unga Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Wide Bay
Enumerated_Domain_Value_Definition: Wide Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Yaquina Bay
Enumerated_Domain_Value_Definition: Yaquina Bay, Oregon, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute:
Attribute_Label: Sample_Location_Latitude
Attribute_Definition:
This is the latitude at which the sample was collected, in decimal degrees.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 24.58013 N
Range_Domain_Maximum: 64.483 N
Attribute_Units_of_Measure: decimal degrees
Attribute:
Attribute_Label: Sample_Location_Longitude
Attribute_Definition:
This is the longitude at which the sample was collected, in decimal degrees.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 111.73000 W
Range_Domain_Maximum: 164.75000 W
Attribute_Units_of_Measure: decimal degrees
Attribute:
Attribute_Label: Collection_Date
Attribute_Definition: This is the date the sample was collected (mm/dd/yyyy).
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 2/19/2000
Range_Domain_Maximum: 9/3/2006
Attribute_Units_of_Measure: day/month/year
Attribute:
Attribute_Label: Sample_Pop_Acronym
Attribute_Definition:
This is a 2-3 letter acronym used in manuscript (Talbot et al 2016) associated with sample location.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: MON
Enumerated_Domain_Value_Definition: Monterey Bay, California, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: IZL
Enumerated_Domain_Value_Definition: Izembek Lagoon, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: AKSI
Enumerated_Domain_Value_Definition: Simeonof Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: BM
Enumerated_Domain_Value_Definition: Bahia Magdelena, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: BSQ
Enumerated_Domain_Value_Definition: Bahia San Quintin, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: EPB
Enumerated_Domain_Value_Definition: Estero Punto Banda, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: National Geosaptial GeoName Thesaurus
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: KIL
Enumerated_Domain_Value_Definition: Kinzarof Lagoon, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: KS
Enumerated_Domain_Value_Definition: Kuskokwim Shoals in Kuskokwim Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NAK
Enumerated_Domain_Value_Definition: Nakwasina Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: PWS
Enumerated_Domain_Value_Definition: Monatague Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: SB
Enumerated_Domain_Value_Definition: Shallow Bay, Washington, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: SCC
Enumerated_Domain_Value_Definition: Saint Catherine Cove, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: SL
Enumerated_Domain_Value_Definition: Safety Sound, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: TOG
Enumerated_Domain_Value_Definition: Togiak Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: UNGA
Enumerated_Domain_Value_Definition: Unga Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: WB
Enumerated_Domain_Value_Definition: Wide Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: YAB
Enumerated_Domain_Value_Definition: Yaquina Bay, Oregon, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System
Attribute:
Attribute_Label: GenBank_Accession_matK
Attribute_Definition:
This is the GenBank (http://www.ncbi.nlm.nih.gov/genbank/) accession number for associated chloroplast maturase K nucleotide sequence data associated with a particular sample, where applicable. Blank cells indcate individuals for which data was not collected.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: KU704922
Range_Domain_Maximum: KU705051
Attribute_Units_of_Measure: GenBank accession number
Attribute:
Attribute_Label: GenBank_Accession_rDNA-ITS
Attribute_Definition:
This is the GenBank (http://www.ncbi.nlm.nih.gov/genbank/) accession number for associated nuclear rDNA-ITS nucleotide sequence data associated with a particular sample, where applicable. Blank cells indcate individuals for which data was not collected.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: KU704818
Range_Domain_Maximum: KU704894
Attribute_Units_of_Measure: GenBank accession number
Attribute:
Attribute_Label: CT3_1
Attribute_Definition:
Microsatellite allele one of the CT3 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 120
Range_Domain_Maximum: 184
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT3_2
Attribute_Definition:
Microsatellite allele two of the CT3 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 120
Range_Domain_Maximum: 184
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT12_1
Attribute_Definition:
Microsatellite allele one of the CT12 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 145
Range_Domain_Maximum: 167
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT12_2
Attribute_Definition:
Microsatellite allele two of the CT12 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 145
Range_Domain_Maximum: 167
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT17_1
Attribute_Definition:
Microsatellite allele one of the CT17 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 131
Range_Domain_Maximum: 227
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT17_2
Attribute_Definition:
Microsatellite allele two of the CT17 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 131
Range_Domain_Maximum: 227
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT19_1
Attribute_Definition:
Microsatellite allele one from the CT19 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 158
Range_Domain_Maximum: 176
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT19_2
Attribute_Definition:
Microsatellite allele two from the CT19 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 158
Range_Domain_Maximum: 176
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT20_1
Attribute_Definition:
Microsatellite allele one from the CT20 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 158
Range_Domain_Maximum: 191
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: CT20_2
Attribute_Definition:
Microsatellite allele two from the CT20 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 158
Range_Domain_Maximum: 191
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA1_1
Attribute_Definition:
Microsatellite allele one from the GA1 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 129
Range_Domain_Maximum: 143
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA1_2
Attribute_Definition:
Microsatellite allele two from the GA1 locus: genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 129
Range_Domain_Maximum: 143
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA2_1
Attribute_Definition:
Microsatellite allele one from the GA2 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 172
Range_Domain_Maximum: 192
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA2_2
Attribute_Definition:
Microsatellite allele two from the GA2 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 172
Range_Domain_Maximum: 192
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA3_1
Attribute_Definition:
Microsatellite allele one from the GA3 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 126
Range_Domain_Maximum: 156
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA3_2
Attribute_Definition:
Microsatellite allele two from the GA3 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 126
Range_Domain_Maximum: 156
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA4_1
Attribute_Definition:
Microsatellite allele one of the GA4 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 154
Range_Domain_Maximum: 157
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA4_2
Attribute_Definition:
Microsatellite allele two of the GA4 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 154
Range_Domain_Maximum: 157
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA5_1
Attribute_Definition:
Microsatellite allele one from the GA5 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 159
Range_Domain_Maximum: 187
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: GA5_2
Attribute_Definition:
Microsatellite allele two from the GA5 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. A blank cell indicates data were not collected at this locus for that sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 159
Range_Domain_Maximum: 187
Attribute_Units_of_Measure: base pairs
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:
This is the label for a sample that did not amplify or show any product (“no product”).
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: Sample_Archive_Location
Attribute_Definition: Agency or institution where the sample is archived.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: U.S. Geological Survey, Alaska Science Center
Enumerated_Domain_Value_Definition:
U.S. Geological Survey, Alaska Science Center 4210 University Drive Anchorage, Alaska 99508 USA
Enumerated_Domain_Value_Definition_Source: USPS Mailing Address
Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Dr.
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Resource_Description: Authoritative source for access to data.
Distribution_Liability:
Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: Zip
Format_Version_Number: 19.0
Format_Information_Content:
Zip file containing the data in CSV file format and FGDC metadata in XML and HTML formats.
File_Decompression_Technique: No compression applied
Transfer_Size: 0.2
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: http://dx.doi.org/10.5066/F7GQ6VTK
Fees: No fees.
Metadata_Reference_Information:
Metadata_Date: 20201125
Metadata_Review_Date: 20201125
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99503
Country: USA
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Metadata_Standard_Name:
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001.1-1999
Metadata_Security_Information:
Metadata_Security_Classification_System: None
Metadata_Security_Classification: Unclassified
Metadata_Security_Handling_Description: None
Generated by mp version 2.9.33 on Mon Apr 25 16:26:51 2016