Denning Behavior Classifications Using Temperature Sensor Data on Collars Deployed on Polar Bears in the Southern Beaufort Sea, 1986-2013

Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: USGS Alaska Science Center, Polar Bear Research Program
Publication_Date: 2017
Title:
Denning Behavior Classifications Using Temperature Sensor Data on Collars Deployed on Polar Bears in the Southern Beaufort Sea, 1986-2013
Geospatial_Data_Presentation_Form: spreadsheet
Publication_Information:
Publication_Place: Anchorage, AK
Publisher: U.S. Geological Survey, Alaska Science Center
Other_Citation_Details:
Please cite this dataset as: USGS Alaska Science Center, Polar Bear Research Program. 2017. Denning Behavior Classifications Using Temperature Sensor Data on Collars Deployed on Polar Bears in the Southern Beaufort Sea, 1986-2013: U.S. Geological Survey data release, https://dx.doi.org/10.5066/F7BP00Z5.
Online_Linkage: http://dx.doi.org/10.5066/F7BP00Z5
Larger_Work_Citation:
Citation_Information:
Originator: USGS Alaska Science Center, Polar Bear Research Program
Publication_Date: 2016
Title:
Changing Arctic Ecosystems: Effects of declining sea ice on polar bears: Linking changes in nutritional ecology to individual and population-level consequences
Geospatial_Data_Presentation_Form: website
Publication_Information:
Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center
Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=370
Description:
Abstract:
These data include two spreadsheets. The first is average daily temperatures received via satellite transmitting collars deployed on polar bears in the southern Beaufort Sea 1986-2013. The second is denning classifications for adult female polar bears in the southern Beaufort Sea using the temperature data. Denning was classified using a control chart-based algorithm applied to the temperature data received from the collars. This method was validated by comparisons with a previous study, direct observations during flights to track collared bears, and observations of females with newborn cubs the following spring. Further information is available in the methods.
Purpose:
These data were used to identify denning behavior of polar bears in the southern Beaufort Sea.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1986
Ending_Date: 2013
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: Not planned
Spatial_Domain:
Description_of_Geographic_Extent: southern Beaufort Sea
Bounding_Coordinates:
West_Bounding_Coordinate: 155.2985
East_Bounding_Coordinate: -111.09
North_Bounding_Coordinate: 82.5415
South_Bounding_Coordinate: 66.8858
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC71
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: biota
Theme:
Theme_Keyword_Thesaurus: USGS Biocomplexity Thesaurus
Theme_Keyword: animals/vertebrates
Theme_Keyword: behavior
Theme_Keyword: dens
Place:
Place_Keyword_Thesaurus: Geographic Names Information System
Place_Keyword: Chukchi Sea
Place_Keyword: Beaufort Sea
Stratum:
Stratum_Keyword_Thesaurus: USGS Biocomplexity Thesaurus
Stratum_Keyword: marine
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: USGS Biocomplexity Thesaurus
Taxonomic_Keywords: Mammals
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator:
Led by the USGS and hosted by the Smithsonian Institution, in cooperation with ITIS partners USDA, NOAA, EPA, US FWS, Agriculture and Agri-Food Canada, National Park Service, Conabio, NatureServe.
Publication_Date: Unknown
Title: Integrated Taxonomic Information System (ITIS)
Geospatial_Data_Presentation_Form: spreadsheet
Publication_Information:
Publication_Place: http://www.itis.gov
Publisher: Integrated Taxonomic Information System
Online_Linkage:
Identifier:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Karyn Rode
Contact_Organization: US Geological Survey
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: AK
Postal_Code: 99508
Country: US
Contact_Voice_Telephone: 9077867106
Contact_Electronic_Mail_Address: krode@usgs.gov
Taxonomic_Procedures: expert advice
Taxonomic_Completeness:
Polar bears are easily distinguishable from other species by physical characteristics and habitat use patterns. In most cases, species was confirmed genetically.
General_Taxonomic_Coverage: polar bears
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Bilateria
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Deuterostomia
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Taxonomic_Classification:
Taxon_Rank_Name: Infraphylum
Taxon_Rank_Value: Gnathostomata
Taxonomic_Classification:
Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Mammalia
Taxonomic_Classification:
Taxon_Rank_Name: Subclass
Taxon_Rank_Value: Theria
Taxonomic_Classification:
Taxon_Rank_Name: Infraclass
Taxon_Rank_Value: Eutheria
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Carnivora
Taxonomic_Classification:
Taxon_Rank_Name: Suborder
Taxon_Rank_Value: Caniformia
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Ursidae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Ursus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Ursus maritimus
Applicable_Common_Name: Polar Bear
Access_Constraints: None
Use_Constraints:
It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications that reference this dataset. It is strongly recommended that careful attention be paid to the contents of the metadata file associated with these data to evaluate data set limitations, restrictions or intended use. It is the responsibility of the user to use the data appropriately and consistent with the limitations of the data in general and these data in particular.
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Karyn Rode
Contact_Organization: US Geological Survey
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: US
Contact_Voice_Telephone: 9077867000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Cross_Reference:
Citation_Information:
Originator: Olson, Jay W.
Originator: Rode, Karyn D.
Originator: Eggett, Dennis
Originator: Smith, Tom S.
Originator: Wilson, Ryan R.
Originator: Durner, George M.
Originator: Fischbach, Anthony
Originator: Atwood, Todd C.
Originator: Douglas, David C.
Publication_Date: 2017
Title:
Collar temperature sensor data reveal long-term patterns in southern Beaufort Sea polar bear den distribution on pack ice and land
Geospatial_Data_Presentation_Form: journal article
Other_Citation_Details: Marine Ecology Progress Series
Online_Linkage: http://dx.doi.org/10.3354/meps12000
Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report: No formal attribute accuracy tests were conducted
Logical_Consistency_Report: No formal logical accuracy tests were conducted
Completeness_Report:
Data set is considered complete for the information presented, as described in the abstract. Users are advised to read the rest of the metadata record carefully for additional details.
Positional_Accuracy:
Horizontal_Positional_Accuracy:
Horizontal_Positional_Accuracy_Report: No formal positional accuracy tests were conducted
Lineage:
Methodology:
Methodology_Type: Field
Methodology_Description:
The temperature sensors deployed on collared adult female polar bears provided data at a frequency ranging from every twenty minutes to once every four to seven hour duty cycle. We used statistical process control methods (i.e., control charts) to identify maternal denning behavior in polar bears based on sensor temperature data. We quantified the routine variation in the temperatures of non-denning bears (n = 109) in order to identify extended periods of warmth indicative of denning animals. The expected mean and control limits were derived using a subset of temperature records spanning from 1 July to 30 June (i.e., “bear-winter”) in which denning statuses had previously been assigned qualitatively using a combination of activity, temperature and location data (Fischbach et al. 2007). We smoothed the daily averages of non-denning bear temperatures using a locally-weighted scatterplot smoothing (i.e., LOESS; span = 0.35) to create an expected seasonal mean for our control charts. Because individual temperature profiles varied substantially from this expected average, we adjusted the starting intercept of the expected seasonal mean for each bear-winter using the mean of the first five temperature observations in an individual bear’s temperature dataset. This altered the actual temperature but maintained the seasonal variation typical of non-denning bears. If the first recorded temperatures occurred during typical denning months (Oct–Apr), the mean of the final five observations was used rather than the first five observations to adjust the starting intercept for a bear-winter. We used an upper control limit of 1.8-sigma which provided a standard deviation of 9 °C for all bear-winters. Setting the control limit to 1.8-sigma provided the temperature limits that most accurately distinguished between denning and non-denning bear-winters (n = 418) as previously determined in Fischbach et al. (2007). We based den status classifications on the number of days a bear’s temperature remained above the upper control limit. Bear temperatures were considered above or below control limits when >1 consecutive mean daily temperature rose above or below the upper control limit, respectively. We used temperatures from previously identified denning bears (Fischbach et al. 2007) to calculate a minimum number of days a bear’s temperature remained above the upper control limit to be classified as denning. In this subpopulation, data suggest that only pregnant females den, thus it was assumed that all dens were attempted maternity dens. Bear-winters that met the minimum duration of 34 days but had <6 mean daily temperature observations were considered to have insufficient data for classification. We also excluded bear-winters that had no observations during denning months (Oct–Apr), and those in which observations ended before January 1 unless denning status was identified before January 1. Bear deaths or shucking of collars were determined from location and activity sensor data and were excluded from the dataset. We validated our classifications of denning behavior using direct observations of denning made via VHF radio tracking or of females with dependent cubs during annual spring capture efforts. We further compared our classifications to those made via qualitative classification informed by activity and temperature sensor data and location quality (Fischbach et al. 2007) although this was not an independent comparison since classifications from Fischbach et al. (2007) were used to develop our methodology. Denning substrate was determined using location data collected from radio collars. Before 2009, most radio collar locations were determined by the Argos system. These location data were filtered to remove implausible locations using the Douglas Argos-Filter algorithm, which retained all standard quality class locations (classes 3, 2, and 1), rejected all class Z locations, and retained auxiliary class locations (0, A, and B) if they were corroborated by a consecutive location within 10 km (maxredun = 10), or if movement rates were <10 km hr-1 (minrate = 10) and turning angles were not extremely acute such that bears were immediately returning to a location they had just been. Accuracy estimates for Argos locations were provided by Collecte Localisation Satellites, the operator of Argos (i.e., 3: <250 m, 2: 250-500 m, 1: 500-1500 m, 0:>1500 m http://www.argos-system.org/manual/; accessed 8 Mar 2016). Because location accuracies were not provided for auxiliary location classes A or B, we prescribed conservative location accuracies of 5000 and 10,000 m, respectively. Some collars deployed 2004-2008 and all collars deployed 2009-2014 provided GPS-derived location data. We assigned locations obtained from GPS collars an accuracy of 30 m. If at least one observed location at the start of, during, or at the end of the denning period identified via temperature data occurred on land and locations preceding or subsequent to denning demonstrated a trajectory to or from that location, it was assumed that the den occurred on land. Dens that occurred on landfast ice were included with land dens (n = 8 of 142 bear-years) for the analysis because we were interested in changes in broad patterns of geographic distribution of dens between pack ice and coastal regions; and because fast ice only occurs along a narrow band near shore in the southern Beaufort Sea. Substrate use before denning was determined based on the number of days bears spent onshore during the months of August to October. Bears were classified as having summered on land if they spent ≥25 days onshore, a timespan intended to identify longer durations rather than shorter visits to shore. Because location data were collected at varying intervals and with varying location accuracies, we used the R statistical computing (R Development Core Team 2013) package ‘crawl’ to model polar bear locations at daily intervals that were then used to determine the number of days a bear spent onshore before denning. We projected the geographic coordinates to reduce geographic biases of the estimated locations on non-Cartesian coordinates near the pole. The ‘crawl’ model allows data to be fit into regular time scales by assuming that a predicted location is a linear interpolation of a bracketed set of modeled locations. A bear was classified as on land or fast ice if its predicted location was within 5 km of land as identified by the Global Self-consistent, Hierarchical, High-resolution, Geographic Database (GSHHG version 2.3.4; http://www.soest.hawaii.edu/pwessel/gshhg/; accessed 8 Mar 2016), as described in Rode et al. (2015). Because transmissions cannot be propagated when a bear is in the water because the antenna is submerged, it is unlikely that locations received within 5 km on shore occurred in water. The 5 km buffer was used to account for low accuracy of some locations. Our 5 km buffer might have resulted in some bears that were on ice being classified as on land but this was less likely to occur during the August to October timeframe in which we analyzed land use because landfast ice is largely absent during this period and the pack ice has generally receded far north of the coast.
Process_Step:
Process_Description:
The original temperature data obtained from the collars were averaged for each date. Further processing of the data to determine if a bear had denned during the winter or not are provided in the methods.
Process_Date: 20151230
Spatial_Data_Organization_Information:
Direct_Spatial_Reference_Method: Point
Spatial_Reference_Information:
Horizontal_Coordinate_System_Definition:
Geographic:
Latitude_Resolution: 0.00000001
Longitude_Resolution: 0.00000001
Geographic_Coordinate_Units: Decimal degrees
Geodetic_Model:
Horizontal_Datum_Name: North American Datum of 1983
Ellipsoid_Name: World Geodetic System of 1984
Semi-major_Axis: 6378137
Denominator_of_Flattening_Ratio: 299.257223563
Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label: Collar Temperature Data
Entity_Type_Definition:
Temperature data received from collars deployed on adult female polar bears in the southern Beaufort Sea 1986-2013
Entity_Type_Definition_Source: Author defined
Attribute:
Attribute_Label: BearID
Attribute_Definition:
Number assigned to each bear to provide an individual identification
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1
Range_Domain_Maximum: 445
Attribute:
Attribute_Label: date
Attribute_Definition: The date in which temperature data were recorded on collar
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 7/2/1985
Range_Domain_Maximum: 4/12/2013
Attribute:
Attribute_Label: N_obs
Attribute_Definition:
The number of temperature observations recorded on the collar for that date
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 7/2/1985
Range_Domain_Maximum: 4/12/2013
Attribute:
Attribute_Label: avetemp
Attribute_Definition:
Average temperature recorded across all observations on a given date on the bear's collar in celsius
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: -68.71
Range_Domain_Maximum: 69.10
Detailed_Description:
Entity_Type:
Entity_Type_Label: Denning Classification and Validation Data
Entity_Type_Definition:
Denning classifications based on a control chart algorithm applied to temperature sensor data satellite-transmitted from collars deployed on adult female polar bears in the southern Beaufort Sea. Classifications from the control chart are compared to classifications from a previously published study (Fischbach et al. 2007), direct observations via telemetry flights of females at den sites, and observations of females with newborn cubs during the subsequent spring.
Entity_Type_Definition_Source: Author defined
Attribute:
Attribute_Label: BearID
Attribute_Definition:
Number assigned to each bear to provide an individual identification
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1
Range_Domain_Maximum: 445
Attribute:
Attribute_Label: denyear
Attribute_Definition:
Year in which a bear denned defined as the spring in which the bear emerged from their den
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1986
Range_Domain_Maximum: 2013
Attribute:
Attribute_Label: FischbachEtAlClassification
Attribute_Definition:
Denning status of a female as determined by methods outlined in Fischbach et al. (2007)
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Yes
Enumerated_Domain_Value_Definition: Bear denned
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: No
Enumerated_Domain_Value_Definition: Bear did not den
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Unk
Enumerated_Domain_Value_Definition:
Fischbach et al. (2007) did not classify as denning or not denning
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: ControlChartDenClassifications
Attribute_Definition:
Denning status of a female as determined by control chart algorithm applied to temperature sensor data
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Yes
Enumerated_Domain_Value_Definition: Bear denned
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: No
Enumerated_Domain_Value_Definition: Bear did not den
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Insufficient
Enumerated_Domain_Value_Definition:
Fischbach et al. (2007) did not classify as denning or not denning
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: ConfirmedViaObsOrTelemetry
Attribute_Definition:
Notes on whether denning behavior was confirmed by other direct observations
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: C
Enumerated_Domain_Value_Definition:
denning was confirmed either via direct visual observation of the den site or via subsequent observation of the bear with newborn cubs the following spring
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: P
Enumerated_Domain_Value_Definition:
Suspected to be a maternal den but without direct visual observation of the den and no subsequent observation of the bear with dependent young
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NA
Enumerated_Domain_Value_Definition: No information available to confirm den
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: den_substrate
Attribute_Definition: Whether a bear denned on sea ice or land
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: 0
Enumerated_Domain_Value_Definition: bear denned on sea ice
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: 1
Enumerated_Domain_Value_Definition: bear denned on land
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NA
Enumerated_Domain_Value_Definition: Unable to determine den substrate
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute:
Attribute_Label: summerlocation
Attribute_Definition:
whether a bear spent > or = 25 consecutive days on land between July and October or not
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: land
Enumerated_Domain_Value_Definition:
bear spent > or = 25 consecutive days on land between July and October
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: sea ice
Enumerated_Domain_Value_Definition:
bear did not spend > or = 25 consecutive days on land between July and October
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: NA
Enumerated_Domain_Value_Definition:
data were insufficient to determine a bear's location throughout July to October
Enumerated_Domain_Value_Definition_Source: Author defined
Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: US
Contact_Voice_Telephone: 9077867000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Distribution_Liability:
Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: CSV
File_Decompression_Technique: No compression applied
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: http://dx.doi.org/10.5066/F7BP00Z5
Fees: None
Metadata_Reference_Information:
Metadata_Date: 20201125
Metadata_Review_Date: 20170320
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: US
Contact_Voice_Telephone: 9077867000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Metadata_Standard_Name:
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001.1-1999

Generated by mp version 2.9.40 on Mon Mar 20 10:28:55 2017