Long-tailed Duck (Clangula hyemalis) Microsatellite DNA Data; Alaska, Canada, Russia, 1994-2002

Identification_Information:

Citation:

Citation_Information:

Originator: Wilson, Robert E. (ORCID: 0000-0003-1800-0183)
Originator: Talbot, Sandra L. (ORCID: 0000-0002-3312-7214)
Publication_Date: 20160201
Title:

Geospatial_Data_Presentation_Form: tabular digital data
Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

Suggested Citation: Wilson, R.E., Talbot, S.L., 2016, Long-tailed Duck (Clangula hyemalis) microsatellite DNA data; Alaska, Canada, Russia, 1994-2002: U.S. Geological Survey data release, https://doi.org/10.5066/F7HX19RJ

Online_Linkage: https://doi.org/10.5066/F7HX19RJ
Larger_Work_Citation:

Citation_Information:

Originator: U.S. Geological Survey, Alaska Science Center
Publication_Date: 19980101
Title:

Spatial Genetic Structure of Long-tailed Ducks (Clangula hyemalis) among Alaskan, Canadian, and Russian Breeding Populations

Geospatial_Data_Presentation_Form: website
Series_Information:

Series_Name: Alaska Science Portal
Issue_Identification: 374

Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

This is a link to the broader USGS Alaska Science Center research project supported by these data. Users will find a description of the research project and links to associated reports, publications, and data products.

Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=374

Description:

Abstract:

This data set describes nuclear microsatellite genotypes derived from twelve autosomal loci (6AB, Aph02, Aph08, Aph19, Aph23, Bca10, Bca11, Hhi5, Sfi11, Smo07, Smo09, and CRG), and two Z-linked microsatellite loci (Bca4 and Smo1). A total of 111 Long-tailed Ducks were examined for this genotyping with samples coming from the two primary breeding locales within Alaska (Arctic Coastal Plain of Alaska and the Yukon Delta, Western Alaska) and a representative locale in the central Canadian Arctic (Queen Maud Gulf Bird Sanctuary, Nunavut, Canada). The sex of most samples was determined in the field by plumage and later confirmed by using the CHD molecular sexing protocol (Griffiths et al., 1998).

Purpose:

To examine nuclear microsatellite allele variation and population genetic structure among samples of Long-tailed Ducks (Clangula hyemalis) collected from Alaska, Canada, and Russia.

Time_Period_of_Content:

Time_Period_Information:

Range_of_Dates/Times:

Beginning_Date: 1994
Ending_Date: 2002

Currentness_Reference: observed

Status:

Progress: Complete
Maintenance_and_Update_Frequency: None planned

Spatial_Domain:

Description_of_Geographic_Extent:

Indigirka River Delta (Russia), Nunavut, Queen Maud Gulf Bird Sanctuary (Canada), Yukon-Kuskokwim Delta (Alaska), Colville River Delta (Alaska)

Bounding_Coordinates:

West_Bounding_Coordinate: 148.9162
East_Bounding_Coordinate: -100.2500
North_Bounding_Coordinate: 70.5095
South_Bounding_Coordinate: 60.8450

Keywords:

Theme:

Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC44

Theme:

Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: Biota
Theme_Keyword: Environment

Theme:

Theme_Keyword_Thesaurus: NASA GCMD Earth Science Keyword Thesaurus
Theme_Keyword: Animals/vertebrates
Theme_Keyword: Birds
Theme_Keyword: Ducks/Geese/Swans

Theme:

Theme_Keyword_Thesaurus: USGS CSA Biocomplexity Thesaurus
Theme_Keyword: Gene Flow
Theme_Keyword: Population Genetics

Theme:

Theme_Keyword_Thesaurus: USGS Thesaurus
Theme_Keyword: Wildlife
Theme_Keyword: Terrestrial ecosystems
Theme_Keyword: Genetics
Theme_Keyword: Polymerase chain reaction

Theme:

Theme_Keyword_Thesaurus: MeSH-National Library of Medicine
Theme_Keyword: DNA
Theme_Keyword: Alleles
Theme_Keyword: Genetic Markers
Theme_Keyword: Microsatellite Repeats
Theme_Keyword: Genotype

Theme:

Theme_Keyword_Thesaurus: None
Theme_Keyword: Long-tailed duck
Theme_Keyword: Clangula hyemalis

Place:

Place_Keyword_Thesaurus: Geographic Names Information System
Place_Keyword: Alaska
Place_Keyword: Colville River Delta
Place_Keyword: Yukon Delta
Place_Keyword: Kuskokwim River
Place_Keyword: Nunavut
Place_Keyword: Queen Maud Gulf
Place_Keyword: Russia
Place_Keyword: Indigirka River

Taxonomy:

Keywords/Taxon:

Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: Animals
Taxonomic_Keywords: Birds
Taxonomic_Keywords: Ducks/Geese/Swans

Taxonomic_System:

Classification_System/Authority:

Classification_System_Citation:

Citation_Information:

Originator: ITIS Integrated Taxonomic Information System
Publication_Date: Unknown
Title: ITIS Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: database
Publication_Information:

Publication_Place: online
Publisher: ITIS-North America

Other_Citation_Details:

Taxonomic details retrieved April 2, 2022, from the Integrated Taxonomic Information System on-line database https://www.itis.gov

Online_Linkage: https://www.itis.gov

Taxonomic_Procedures:

Species were identified by skilled observers in the field based on general appearance of feathers and plumage, behavior, and vocalization.

Taxonomic_Classification:

Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:

Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Bilateria
Taxonomic_Classification:

Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Deuterostomia
Taxonomic_Classification:

Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:

Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Taxonomic_Classification:

Taxon_Rank_Name: Infraphylum
Taxon_Rank_Value: Gnathostomata
Taxonomic_Classification:

Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:

Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Taxonomic_Classification:

Taxon_Rank_Name: Order
Taxon_Rank_Value: Anseriformes
Taxonomic_Classification:

Taxon_Rank_Name: Family
Taxon_Rank_Value: Anatidae
Taxonomic_Classification:

Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Anatinae
Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Clangula
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Clangula hyemalis
Applicable_Common_Name: Long-tailed duck
Applicable_Common_Name: TSN: 175147

Access_Constraints: None
Use_Constraints:

It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications that reference this dataset.

Point_of_Contact:

Contact_Information:

Contact_Organization_Primary:

Contact_Organization: U.S. Geological Survey, Alaska Science Center

Contact_Address:

Address_Type: Mailing and Physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA

Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov

Data_Set_Credit: US Geological Survey, Alaska Science Center, Anchorage, AK
Cross_Reference:

Citation_Information:

Originator: Wilson, R.E.
Originator: Gust, J.R.
Originator: Petersen, M.R.
Originator: Talbot, S.L.
Publication_Date: 2016
Title:

Spatial Genetic Structure of Long-tailed Ducks (Clangula hyemalis) among Alaskan, Canadian, and Russian Breeding Populations

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Arctic
Issue_Identification: 69(1)

Publication_Information:

Publication_Place: online
Publisher: Arctic Institute of North America

Other_Citation_Details:

Wilson, R.E., Gust, J.R., Petersen, M.R., Talbot, S.L. 2016. Spatial Genetic Structure of Long-tailed Ducks (Clangula hyemalis) among Alaskan, Canadian, and Russian Breeding Populations. Arctic 69(1) doi:10.14430/arctic4548

Online_Linkage: https://doi.org/10.14430/arctic4548

Data_Quality_Information:

Attribute_Accuracy:

Attribute_Accuracy_Report:

Identifying information about samples were cross-checked with original field data. Polymerase chain reaction (PCR) amplification and electrophoresis followed protocols described in Sonsthagen et al 2004. Quality control (QC) included a minimum of 20% re-extraction and PCR replication for each locus and all laboratory techniques were performed using sterile procedures. All duplicate characterizations of the same individual resulted in concordant data.

Logical_Consistency_Report:

For microsatellite loci, reported allele sizes were reviewed to confirm that they conform to expected distributions (e.g. dinucleotide repeats with 1 base pair differences were reviewed on gel images by laboratory personnel, gaps in allele sizes were reviewed, and single occurrences of an allele size were scrutinized). No inconsistencies in genotype scores were observed between replicates. Tests for null alleles and allelic dropout were implemented in MicroChecker (van Oosterhout et al 2004).

Completeness_Report:

No data were omitted. Blank cells are described for each attribute.

Several samples were excluded from final analysis and discussion by Wilson et al 2016

Lineage:

Methodology:

Methodology_Type: Field
Methodology_Description:

Blood samples were collected from the jugular or brachial vein and stored in preservation buffer.

Methodology:

Methodology_Type: Lab
Methodology_Description:

DNA was extracted using a modified salt extraction technique (Medrano et al 1990; Sonsthagen et al 2004) or using a Qiagen Dneasy Blood and Tissue extraction kit (QIAGEN, Düsseldorf, Germany) following manufacturer’s protocol.

Methodology:

Methodology_Type: Lab
Methodology_Description:

Polymerase chain reaction (PCR) amplification and scoring of microsatellites followed Sonsthagen et al 2004 except the thermocycler parameters consisted of a 2 min denaturation at 94 °C, followed 40 cycles at 94°C for 15 seconds, 50°C for 15 seconds and 72 °C for 30 seconds with a final extension at 72 °C for 30 min. Microsatellite alleles were resolved on a 25 cm 6% polyacrylamide gel using a LI-COR (IR 4200) automated DNA sequencer. For quality control purposes, we extracted, amplified, and sequenced, 20% of the samples in duplicate.

Source_Information:

Source_Citation:

Citation_Information:

Originator: Medrano, J.F.
Originator: Aasen, E.
Originator: Sharrow, L.
Publication_Date: 1990
Title: DNA extraction from nucleated red blood cells
Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Biotechniques
Issue_Identification: 8(1):43

Publication_Information:

Publication_Place: online
Publisher: Future Science, Ltd.

Other_Citation_Details:

Medrano, J.F., Aasen, E., Sharrow, L. 1990. DNA extraction from nucleated red blood cells. Biotechniques 8(1):43

Type_of_Source_Media: publication
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 1990

Source_Currentness_Reference: publication date

Source_Citation_Abbreviation: Medrano et al 1990
Source_Contribution:

Laboratory Technique Citation: describes DNA extraction technique.

Source_Information:

Source_Citation:

Citation_Information:

Originator: Sonsthagen, S.A.
Originator: Talbot, S.L.
Originator: White, C.M.
Publication_Date: 2004
Title:

Gene flow and genetic characterization of Northern Goshawks breeding in Utah.

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Condor
Issue_Identification: 106(4):826–836

Publication_Information:

Publication_Place: Oxford, UK
Publisher: Oxford University Press

Other_Citation_Details:

Sonsthagen, S.A., Talbot, S.L., White, C.M. 2004. Gene flow and genetic characterization of Northern Goshawks breeding in Utah. Condor 106(4):826–836.

Online_Linkage: http://www.jstor.org/stable/3247787

Type_of_Source_Media: publication
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2004

Source_Currentness_Reference: publication date

Source_Citation_Abbreviation: Sonsthagen et al 2004
Source_Contribution:

Laboratory Technique Citation: describes DNA extraction, polymerase chain reaction (PCR) amplification and electrophoresis and scoring of microsatellite protocols.

Source_Information:

Source_Citation:

Citation_Information:

Originator: van Oosterhout, C.
Originator: Hutchinson, W.F.
Originator: Wills, D.P.M.
Originator: Shipley, P.
Publication_Date: 2004
Title:

MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Molecular Ecology Notes
Issue_Identification: 4(3):535-538

Publication_Information:

Publication_Place: online
Publisher: Wiley Online Library

Other_Citation_Details:

van Oosterhout, C., Hutchinson, W.F., Wills, D.P.M., Shipley, P. 2004. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4(3):535-538 doi:10.1111/j.1471-8286.2004.00684.x

Online_Linkage: https://doi.org/10.1111/j.1471-8286.2004.00684.x

Type_of_Source_Media: publication
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2004

Source_Currentness_Reference: publication date

Source_Citation_Abbreviation: van Oosterhout et al 2004
Source_Contribution:

Laboratory Technique Citation: describes tool used to identify potential scoring errors and null alleles of microsatellite loci.

Source_Information:

Source_Citation:

Citation_Information:

Originator: Griffiths, R.
Originator: Double, M.C.
Originator: Orr, K.
Originator: Dawson, R.J.G.
Publication_Date: 1998
Title: A DNA test to sex most birds
Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Molecular Ecology
Issue_Identification: 7(8):1071–1075

Publication_Information:

Publication_Place: Online
Publisher: Elsevier Inc.

Other_Citation_Details:

Griffiths, R., Double, M.C., Orr, K., Dawson, R.J.G. 1998. A DNA test to sex most birds. Molecular Ecology 7(8):1071–1075 doi:10.1046/j.1365-294x.1998.00389.x

Online_Linkage: https://doi.org/10.1046/j.1365-294x.1998.00389.x

Type_of_Source_Media: publication
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 1998

Source_Currentness_Reference: publication date

Source_Citation_Abbreviation: Griffiths et al 1998
Source_Contribution: Describes molecular technique to determine sex in birds.

Process_Step:

Process_Description:

Initial microsatellite allele sizes were determined by scoring based on PCR product size relative to an M13 DNA sequence ladder using Gene Profiler 4.05 (Scanalytics, Inc., Fairfax, VA). Subsequent gels included these known size individuals from which relative sizes of unknown individuals were assigned using Gene Profiler 4.05. For this reason, these microsatellite data cannot be combined with data generated outside the USGS Alaska Science Center without molecular size calibration between laboratories. MtDNA sequences from opposite strands were reconciled using Sequencher 4.1.2 (Gene Codes Corporation, Ann Arbor, MI). Tests for null alleles and allelic dropout were implemented in MicroChecker (van Oosterhout et al 2004).

Process_Date: Unknown

Process_Step:

Process_Description:

Sequences of novel microsatellite loci developed in this study were submitted to the NCBI Genbank publicly available genetic sequence data database.

Process_Date: Unknown
Source_Produced_Citation_Abbreviation: NCBI GenBank

Spatial_Data_Organization_Information:

Indirect_Spatial_Reference:

Location names are proper and common names for sampling areas, they do not represent specific geographic points.

Direct_Spatial_Reference_Method: Point

Spatial_Reference_Information:

Horizontal_Coordinate_System_Definition:

Geographic:

Latitude_Resolution: 0.0001
Longitude_Resolution: 0.0001
Geographic_Coordinate_Units: Decimal degrees

Geodetic_Model:

Horizontal_Datum_Name: World Geodetic System of 1984
Ellipsoid_Name: World Geodetic System of 1984
Semi-major_Axis: 6378137
Denominator_of_Flattening_Ratio: 298.257223563

Entity_and_Attribute_Information:

Detailed_Description:

Entity_Type:

Entity_Type_Label: longTailedDuck_microsat_wilson.csv
Entity_Type_Definition:

Table with descriptions of sample type, age, sex, collection date, and location and values for twelve autosomal loci (6AB, Aph02, Aph08, Aph19, Aph23, Bca10, Bca11, Hhi5, Sfi11, Smo07, Smo09, and CRG), and two Z-linked microsatellite loci (Bca4 and Smo1) were used to generate genotype data and describe genetic diversity and structure. Presented in a Comma Separated Value (CSV) formatted table.

Entity_Type_Definition_Source: Author defined

Attribute:

Attribute_Label: Id No
Attribute_Definition: Unique identifying number for the sample.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: Unique identifier

Attribute:

Attribute_Label: Id Type
Attribute_Definition:

Description of the Id no. field by type. A combination of species code (LTDU: Long-tailed Duck), locality codes, year code, nest number based on field biologists initials, and or last 3 or 4 digits of USGS metal leg band number. These codes uniquely identified the sample.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain:

Attribute:

Attribute_Label: Organism Type
Attribute_Definition: Broad taxonomic group of sample
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Bird
Enumerated_Domain_Value_Definition: Taken from the captured or collected bird.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Species
Attribute_Definition: Species of sample
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Clangula hyemalis
Enumerated_Domain_Value_Definition: Scientific name of Long-tailed duck
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: USGS Band Number
Attribute_Definition:

Last 5 digits of the USGS Bird Banding Lab (BBL) metal tarsal band attached to the bird in the field. Blank cells indicate bird not banded.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain:

Last 5 digits of the USGS Bird Banding Lab (BBL) metal tarsal band

Attribute:

Attribute_Label: Sample Type
Attribute_Definition: Identification of type of biological sample taken.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Blood
Enumerated_Domain_Value_Definition: Taken from the captured or collected bird.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Egg shell membrane
Enumerated_Domain_Value_Definition: Collected from a nest after the eggs have hatched.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Muscle tissue
Enumerated_Domain_Value_Definition: Collected from a bird carcass.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Location Name
Attribute_Definition: Sampling location of bird for genetic sample
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Colville River Delta
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Colville River, Butterfly
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Colville River, Dune Island
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Colville River, Ptarmigan
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Colville River, Whitefront
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Point Thompson
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Yukon–Kuskokwim Delta
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Yukon–Kuskokwim Delta, Aropuk Lake
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Yukon–Kuskokwim Delta, Hock Slough
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Alaska: Yukon–Kuskokwim Delta, Kigigak Island
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Nunavut, Queen Maud Gulf Bird Sanctuary
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Russia: Indigirka River Delta
Enumerated_Domain_Value_Definition: Region and specific collection location by name.
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute:

Attribute_Label: Approximate Latitude
Attribute_Definition:

Latitude of bird capture location as determined by hand held GPS. Coordinates are expressed as North latitude, decimal degrees, WGS84 datum.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 60.8450
Range_Domain_Maximum: 70.8126
Attribute_Units_of_Measure: Decimal degrees (WGS84)

Attribute:

Attribute_Label: Approximate Longitude
Attribute_Definition:

Longitude of bird capture location as determined by hand held GPS. Coordinates are expressed as East or West longitude, decimal degrees, WGS84 datum.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: -165.5833
Range_Domain_Maximum: 148.9162
Attribute_Units_of_Measure: Decimal degrees (WGS84)

Attribute:

Attribute_Label: Collection Date
Attribute_Definition:

Date the genetic sample was taken in the field. When exact day and month are unknown, only the year is given.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 1994-06-14
Range_Domain_Maximum: 2002-08-10
Attribute_Units_of_Measure: Date (YYYY-MM-DD)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: unknown
Enumerated_Domain_Value_Definition: Collection date unknown
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Age
Attribute_Definition: Age class
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: HY
Enumerated_Domain_Value_Definition:

Hatch year: sample collected during the summer or fall in the hatch year of the bird

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Adult
Enumerated_Domain_Value_Definition: Bird is of adult age (>1 year of age)
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Sex
Attribute_Definition: Sex of the sampled duck
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Male
Enumerated_Domain_Value_Definition: Bird is male based on one or two sex verification methods
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Female
Enumerated_Domain_Value_Definition: Bird is female based on one or two sex verification methods
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Unknown
Enumerated_Domain_Value_Definition: Bird is of unknown sex
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Female/Male
Enumerated_Domain_Value_Definition:

The bird was sexed as a Female via the first Sex Verification Method and then sexed differently by a secondary method shown in the Sex Verification Method column. The sex of most samples was determined in the field by plumage and later confirmed by using the CHD molecular sexing protocol (Griffiths et al 1998). Additionally, two sex-linked microsatellite markers (Bca4 and Smo1) were used in the study and females are always homozygous for these loci. Thus, any heterozygous individuals at these two loci must be males.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Sex verification method
Attribute_Definition:

Sex of the sampled duck was first determined in the field if possible based on plumage characteristics of the bird. The sex of most samples was determined in the field by plumage and later confirmed by using the CHD molecular sexing protocol (Griffiths et al 1998). Additionally, two sex-linked microsatellite markers (Bca4 and Smo1) were used in the study and females are always homozygous for these loci. Thus, any heterozygous individuals at these two loci must be males. Samples noted as "not determined" are cases where sex could not be determined molecularly.

Attribute_Definition_Source: Author defined and Griffiths et al 1998
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: not determined
Enumerated_Domain_Value_Definition:

Sex was not able to be determined by either sex verification method

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: CHD
Enumerated_Domain_Value_Definition:

Sex was determined or confirmed using the molecular sexing method of Griffiths et al 1998

Enumerated_Domain_Value_Definition_Source: Griffiths et al 1998

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: In Field/CHD
Enumerated_Domain_Value_Definition:

Sex was determined in the field first using plumage characteristics and then confirmed in the laboratory using the molecular method of Griffiths et al 1998

Enumerated_Domain_Value_Definition_Source: Griffiths et al 1998

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: In Field/Sex-linked markers
Enumerated_Domain_Value_Definition:

Sex was determined in the field first using plumage characteristics and then confirmed in the laboratory using the genotype from sex-linked markers used by Wilson et al 2016

Enumerated_Domain_Value_Definition_Source: Wilson et al 2016

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Sex-linked markers
Enumerated_Domain_Value_Definition:

Sex was determined using the genotype from sex-linked markers used by Wilson et al. 2016

Enumerated_Domain_Value_Definition_Source: Wilson et al 2016

Attribute:

Attribute_Label: Excluded from analysis by Wilson et al 2016
Attribute_Definition:

Indicator variable of whether sample was excluded from final analysis due to too many genotype missed across all loci.

Attribute_Definition_Source: Wilson et al 2016
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Yes
Enumerated_Domain_Value_Definition:

Sample was not included in the final analysis by Wilson et al 2016 due to several locus genotypes not amplifying during laboratory analysis.

Enumerated_Domain_Value_Definition_Source: Wilson et al 2016

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: No
Enumerated_Domain_Value_Definition: Sample was included in the final analysis by Wilson et al 2016
Enumerated_Domain_Value_Definition_Source: Wilson et al 2016

Attribute:

Attribute_Label: 6AB_1
Attribute_Definition: Microsatellite allele one from the 6AB locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 106
Range_Domain_Maximum: 116
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: 6AB_2
Attribute_Definition: Microsatellite allele two from the 6AB locus
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 112
Range_Domain_Maximum: 120
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph02_1
Attribute_Definition: Microsatellite allele one from the Aph02 locus.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 106
Range_Domain_Maximum: 118
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph02_2
Attribute_Definition: Microsatellite allele two from the Aph02 locus
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 112
Range_Domain_Maximum: 120
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph08_1
Attribute_Definition: Microsatellite allele one from the Aph08 locus.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 135
Range_Domain_Maximum: 145
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph08_2
Attribute_Definition: Microsatellite allele two from the Aph08 locus.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 137
Range_Domain_Maximum: 149
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph19_1
Attribute_Definition: Microsatellite allele one from the Aph19 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 182
Range_Domain_Maximum: 193
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph19_2
Attribute_Definition: Microsatellite allele two from the Aph19 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 183
Range_Domain_Maximum: 199
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph23_1
Attribute_Definition: Microsatellite allele one from the Aph23 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 203
Range_Domain_Maximum: 213
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Aph23_2
Attribute_Definition: Microsatellite allele two from the Aph23 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 207
Range_Domain_Maximum: 217
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Bca10_1
Attribute_Definition: Microsatellite allele one from the Bca10 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 125
Range_Domain_Maximum: 143
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Bca10_2
Attribute_Definition: Microsatellite allele two from the Bca10 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 127
Range_Domain_Maximum: 151
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Bca11_1
Attribute_Definition: Microsatellite allele one from the Bca11 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 135
Range_Domain_Maximum: 139
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Bca11_2
Attribute_Definition: Microsatellite allele two from the Bca11 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 135
Range_Domain_Maximum: 145
Attribute_Units_of_Measure: base pairs

Attribute:

Attribute_Label: CRG_1
Attribute_Definition: Microsatellite allele one from the CRG locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 168
Range_Domain_Maximum: 174
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: CRG_2
Attribute_Definition: Microsatellite allele two from the CRG locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 168
Range_Domain_Maximum: 176
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Hhi3_1
Attribute_Definition: Microsatellite allele one from the Hhi3 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 156
Range_Domain_Maximum: 158
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Hhi3_2
Attribute_Definition: Microsatellite allele two from the Hhi3 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 156
Range_Domain_Maximum: 160
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Sfiu11_1
Attribute_Definition: Microsatellite allele one from the Sfiu11 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 145
Range_Domain_Maximum: 149
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Sfiu11_2
Attribute_Definition: Microsatellite allele two from the Sfiu11 locus
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 147
Range_Domain_Maximum: 153
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Smo7_1
Attribute_Definition: Microsatellite allele one from the Smo7 locus.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 199
Range_Domain_Maximum: 207
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Smo9_1
Attribute_Definition: Microsatellite allele one from the Smo9 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 168
Range_Domain_Maximum: 190
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Smo9_2
Attribute_Definition: Microsatellite allele two from the Smo9 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 172
Range_Domain_Maximum: 202
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Bca4_1
Attribute_Definition: Microsatellite allele one from the Bca4 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 202
Range_Domain_Maximum: 244
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Bca4_2
Attribute_Definition: Microsatellite allele two from the Bca4 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 202
Range_Domain_Maximum: 244
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Smo1_1
Attribute_Definition: Microsatellite allele one from the Smo1 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 148
Range_Domain_Maximum: 178
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Attribute:

Attribute_Label: Smo1_2
Attribute_Definition: Microsatellite allele two from the Smo1 locus.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Range_Domain:

Range_Domain_Minimum: 148
Range_Domain_Maximum: 178
Attribute_Units_of_Measure: base pairs

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: np
Enumerated_Domain_Value_Definition:

No Product: The code "np" in a cell of the data set refers to a sample that did not amplify or show any product.

Enumerated_Domain_Value_Definition_Source: Author defined

Long-tailed Duck (Clangula hyemalis) Microsatellite DNA Data; Alaska, Canada, Russia, 1994-2002

Metadata: