Laysan Teal (Anas laysanensis) Microsatellite DNA Data; Laysan Island 1999-2009, Midway Atoll 2007-2010

Identification_Information:

Citation:

Citation_Information:

Originator: Reynolds, Michelle H. (ORCID: 0000-0001-7253-8158)
Originator: Pearce, John M. (ORCID: 0000-0002-8503-5485)
Publication_Date: 20150728
Title:

Geospatial_Data_Presentation_Form: tabular digital data
Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

Suggested Citation: Reynolds, M.H., Pearce, J.M., 2015, Laysan Teal (Anas laysanensis) microsatellite DNA data; Laysan Island 1999-2009, Midway Atoll 2007-2010: U.S. Geological Survey data release, https://doi.org/10.5066/F72Z13JP

Online_Linkage: https://doi.org/10.5066/F72Z13JP
Larger_Work_Citation:

Citation_Information:

Originator: U.S. Geological Survey, Alaska Science Center
Publication_Date: 2000
Title:

Developing and Applying Molecular Tools to Natural Resource Problems in Alaska

Geospatial_Data_Presentation_Form: website
Series_Information:

Series_Name: Alaska Science Portal
Issue_Identification: 378

Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

This is a link to the broader USGS Alaska Science Center research project supported by these data. Users will find a description of the research project and links to associated reports, publications, and data products.

Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=378

Description:

Abstract:

The geographically closed, non-migratory populations of endangered Laysan Teal (Anas laysanensis) were sampled in the wild. This species was once widespread across the Hawaiian archipelago, but became isolated on Laysan Island (415 ha) from the mid-1800s until 2004 when a translocation to Midway Atoll (596 ha) was undertaken to reduce extinction risks. We compared genetic diversity and quantified variation at microsatellite loci sampled from 229 individuals from the wild populations at Laysan Island (1999–2009) and Midway Atoll (2007–2010; n = 133 Laysan, n = 96 Midway birds). We identified polymorphic markers by screening nuclear microsatellites (N = 83). Low nuclear variation was detected, consistent with the species’ insular isolation and historical bottleneck. Six of 83 microsatellites were polymorphic.

Purpose:

Quantify variation in the endangered Laysan Teal (Duck; Anas laysanensis) at microsatellite loci sampled from 229 individuals at Laysan Island (1999-2009) and Midway Atoll (2007-2010).

Time_Period_of_Content:

Time_Period_Information:

Range_of_Dates/Times:

Beginning_Date: 1999
Ending_Date: 2010

Currentness_Reference: observed

Status:

Progress: Complete
Maintenance_and_Update_Frequency: None planned

Spatial_Domain:

Description_of_Geographic_Extent: Midway Atoll, Laysan Island
Bounding_Coordinates:

West_Bounding_Coordinate: -177.89800
East_Bounding_Coordinate: -171.09000
North_Bounding_Coordinate: 28.49900
South_Bounding_Coordinate: 25.13200

Keywords:

Theme:

Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC33

Theme:

Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: Biota
Theme_Keyword: Environment

Theme:

Theme_Keyword_Thesaurus: NASA GCMD Earth Science Keyword Thesaurus
Theme_Keyword:

Biological Classification > Animals/Vertebrates > Birds > Ducks/Geese/Swans,

Theme_Keyword: Biosphere > Terrestrial Ecosystems > Islands,
Theme_Keyword:

Biosphere > Ecological Dynamics > Species/Population Interactions > Endangered Species,

Theme_Keyword:

Biosphere > Ecological Dynamics > Species/Population Interactions > Indigenous/Native Species

Theme:

Theme_Keyword_Thesaurus: USGS CSA Biocomplexity Thesaurus
Theme_Keyword: Genetic diversity
Theme_Keyword: Animal Species reintroduction

Theme:

Theme_Keyword_Thesaurus: None
Theme_Keyword: island endemic
Theme_Keyword: genetic diversity
Theme_Keyword: Laysan duck
Theme_Keyword: reintroduction biology

Place:

Place_Keyword_Thesaurus: USGS Geographic Names Information System (GNIS)
Place_Keyword: Laysan Island
Place_Keyword: Midway Atoll

Taxonomy:

Keywords/Taxon:

Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: animals
Taxonomic_Keywords: mammals
Taxonomic_Keywords: vertebrates

Taxonomic_System:

Classification_System/Authority:

Classification_System_Citation:

Citation_Information:

Originator: ITIS Integrated Taxonomic Information System
Publication_Date: Unknown
Title: ITIS Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: online database
Publication_Information:

Publication_Place: online
Publisher: ITIS-North America

Other_Citation_Details:

Taxonomic details retrieved March 27, 2022, from the Integrated Taxonomic Information System online database https://www.itis.gov

Online_Linkage: https://www.itis.gov

Taxonomic_Procedures:

Species were identified by skilled observers in the field based on general appearance of feathers and plumage, behavior, and vocalization.

Taxonomic_Classification:

Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:

Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Bilateria
Taxonomic_Classification:

Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Deuterostomia
Taxonomic_Classification:

Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:

Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Taxonomic_Classification:

Taxon_Rank_Name: Infraphylum
Taxon_Rank_Value: Gnathostomata
Taxonomic_Classification:

Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:

Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Taxonomic_Classification:

Taxon_Rank_Name: Order
Taxon_Rank_Value: Anseriformes
Taxonomic_Classification:

Taxon_Rank_Name: Family
Taxon_Rank_Value: Anatidae
Taxonomic_Classification:

Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Anatinae
Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Anas
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas laysanensis
Applicable_Common_Name: Laysan Duck
Applicable_Common_Name: TSN 175119

Access_Constraints: None
Use_Constraints:

It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications that reference this dataset.

Point_of_Contact:

Contact_Information:

Contact_Organization_Primary:

Contact_Organization: U.S. Geological Survey, Alaska Science Center

Contact_Address:

Address_Type: Mailing and Physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA

Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov

Data_Set_Credit:

US Geological Survey, Pacific Island Ecosystems Research Center, Hawaii National Park, Hawai'i; US Geological Survey, Alaska Science Center, Anchorage, AK

Cross_Reference:

Citation_Information:

Originator: Reynolds, M.H.
Originator: Pearce, J.M.
Originator: Lavretsky, P.
Originator: Seixas, P.P.
Originator: Courtot, K.N.
Publication_Date: 2015
Title:

Microsatellite variation and rare alleles in a bottlenecked Hawaiian Islands endemic: implications for reintroductions

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Endangered Species Research
Issue_Identification: 28:117-122

Publication_Information:

Publication_Place: online
Publisher: Inter-Research Science Publisher

Other_Citation_Details:

Reynolds, M.H., Pearce, J.M., Lavretsky, P., Seixas, P.P., Courtot, K.N. 2015. Microsatellite variation and rare alleles in a bottlenecked Hawaiian Islands endemic: implications for reintroductions. Endangered Species Research 28:117-122 doi:10.3354/esr00681

Online_Linkage: https://doi.org/10.3354/esr00681

Cross_Reference:

Citation_Information:

Originator: Reynolds, M.H.
Originator: Pearce, J.M.
Originator: Lavretsky, P.
Originator: Peters, J.L.
Originator: Courtot, K.N.
Originator: Seixas, P.P.
Publication_Date: 2015
Title:

Evidence of low genetic variation and rare alleles in a bottlenecked endangered island endemic, the Laysan Teal (Anas laysanensis)

Geospatial_Data_Presentation_Form: document
Series_Information:

Series_Name: USGS Technical Report
Issue_Identification: HCSU-063

Publication_Information:

Publication_Place: Hilo, HI
Publisher: Hawai`i Cooperative Studies Unit, University of Hawai'i at Hilo

Other_Citation_Details:

Reynolds, M.H., Pearce, J.M., Lavretsky, P., Peters, J.L., Courtot, K.N., Seixas, P.P. 2015. Evidence of low genetic variation and rare alleles in a bottlenecked endangered island endemic, the Laysan Teal (Anas laysanensis). USGS Technical Report HCSU-063

Online_Linkage:

http://hilo.hawaii.edu/hcsu/documents/TR63_Reynolds_Duck_Final.pdf

Entity_and_Attribute_Information:

Detailed_Description:

Entity_Type:

Entity_Type_Label: laysanTeal_microsat_reynolds.csv
Entity_Type_Definition:

Genetic diversity and quantified variation at microsatellite loci sampled from 229 individuals from the wild populations at Laysan Island (1999–2009) and Midway Atoll(2007–2010; n = 133 Laysan, n = 96 Midway birds). Presented in a Comma Separated Value (CSV) formatted table.

Entity_Type_Definition_Source: Author defined

Attribute:

Attribute_Label: ID No
Attribute_Definition:

USGS metal band number, necropsy ID number, or color band combination code that uniquely identified the sample.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: ID Type
Attribute_Definition:

Description of the ID no. field by type. Metal band with number and auxiliary color band is a unique identifier. USGS Band number is a unique 9 digit number stamped on a metal band that is placed on the bird’s leg when it is captured alive. Band numbers are assigned by the USGS Bird Banding Laboratory at the USGS Patuxent Wildlife Research Center. Necropsy ID is a unique number assigned by the USGS National Wildlife Health Center, Honolulu, Hawi’i.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Sample Type
Attribute_Definition:

A description of tissue origin of the sample. Blood, body tissue (e.g., heart, muscle) or feather.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Island Source
Attribute_Definition:

Atoll in Northwestern Hawaii at which the duck was sampled and with which the sample was grouped for analysis in the Reynolds et al. (2015) paper (2 groups). Laysan* represents founder bird (translocated from Laysan Island to Midway Atoll).

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Collection Date
Attribute_Definition:

Date the blood or feather sample was taken. If “Sample Type” is “Tissue” then the date represents the date the carcass was collected.

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Age
Attribute_Definition: Age of duck when sampled.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Sex
Attribute_Definition: Sex of the sampled duck: female (F), male (M), or unknown (U).
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: M
Enumerated_Domain_Value_Definition: Male duck
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: F
Enumerated_Domain_Value_Definition: Female duck
Enumerated_Domain_Value_Definition_Source: Author defined

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: U
Enumerated_Domain_Value_Definition: Unknown sex
Enumerated_Domain_Value_Definition_Source: Author defined.

Attribute:

Attribute_Label: Bca3_1
Attribute_Definition:

Microsatellite allele one from the Bca3 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Bca3_2
Attribute_Definition:

Microsatellite allele two from the Bca3 locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Smo4_1
Attribute_Definition:

Microsatellite allele one from the Smo4locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Smo4_2
Attribute_Definition:

Microsatellite allele two from the Smo4locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Smo6_1
Attribute_Definition:

Microsatellite allele one from the Smo6locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Smo6_2
Attribute_Definition:

Microsatellite allele two from the Smo6locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Smo11_1
Attribute_Definition:

Microsatellite allele one from the Smo11locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Smo11_2
Attribute_Definition:

Microsatellite allele two from the Smo11locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Aph21_1
Attribute_Definition:

Microsatellite allele one from the Aph21locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Aph21_2
Attribute_Definition:

Microsatellite allele two from the Aph21locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author definde.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Sfiu8_1
Attribute_Definition:

Microsatellite allele one from the Sfiu8locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Attribute:

Attribute_Label: Sfiu8_2
Attribute_Definition:

Microsatellite allele two from the Sfiu8locus. Genotype numbers were determined by scoring based on allele size relative to an M13 DNA sequence ladder and to samples established as size standards that were run on each gel. The code “np” in a cell of the data set refers to a sample that did not amplify or show any product (“no product”).

Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:

Unrepresentable_Domain: No domain

Laysan Teal (Anas laysanensis) Microsatellite DNA Data; Laysan Island 1999-2009, Midway Atoll 2007-2010

Metadata: