Genomic Data of North American Sea Ducks

Identification_Information:

Citation:

Citation_Information:

Originator: Sonsthagen, S.A. (ORCID: 0000-0001-6215-5874)
Originator: Wilson, R.E. (ORCID: 0000-0003-1800-0183)
Originator: Lavretsky, P.
Originator: Talbot, S.L. (ORCID: 0000-0002-3312-7214)
Publication_Date: 20210408
Title: Genomic Data of North American Sea Ducks
Geospatial_Data_Presentation_Form: tabular digital data
Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

Suggested Citation: Sonsthagen, S.A., Wilson, R.E., Lavretsky, P., Talbot, S.L., 2021, Genomic data of North American Sea Ducks: U.S. Geological Survey data release, https://doi.org/10.5066/F7T43RK9

Online_Linkage: https://doi.org/10.5066/F7T43RK9
Larger_Work_Citation:

Citation_Information:

Originator: U.S. Geological Survey, Alaska Science Center
Publication_Date: 2015
Title: Genomics of Wildlife
Geospatial_Data_Presentation_Form: website
Series_Information:

Series_Name: Alaska Science Portal
Issue_Identification: 416

Publication_Information:

Publication_Place: Anchorage, Alaska
Publisher: U.S. Geological Survey, Alaska Science Center

Other_Citation_Details:

This is a link to the broader USGS Alaska Science Center research project supported by these data. Users will find a description of the research project and links to associated reports, publications, and data products.

Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=416

Description:

Abstract:

This data set describes accession numbers for nucleotide sequence data derived from whole mitochondrial genome and double digest restriction-site associated DNA (ddRAD).

Purpose:

To examine phylogenomic relationships among sea ducks of North America.

Time_Period_of_Content:

Time_Period_Information:

Range_of_Dates/Times:

Beginning_Date: 2005
Ending_Date: 2018

Currentness_Reference: observed

Status:

Progress: Complete
Maintenance_and_Update_Frequency: None planned

Spatial_Domain:

Description_of_Geographic_Extent:

Alaska, USA, east to Nova Scotia, Canada, and south to Baja California, Mexico.

Bounding_Coordinates:

West_Bounding_Coordinate: -161.7
East_Bounding_Coordinate: 57.3
North_Bounding_Coordinate: 71.0
South_Bounding_Coordinate: 30.5

Keywords:

Theme:

Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC361

Theme:

Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: Biota
Theme_Keyword: Environment

Theme:

Theme_Keyword_Thesaurus: NASA GCMD Earth Science Keyword Thesaurus
Theme_Keyword: Animals/Vertebrates
Theme_Keyword: Birds
Theme_Keyword: Estuarine habitat

Theme:

Theme_Keyword_Thesaurus: USGS CSA Biocomplexity Thesaurus
Theme_Keyword: Waterfowl
Theme_Keyword: Migratory birds

Theme:

Theme_Keyword_Thesaurus: USGS Thesaurus
Theme_Keyword: Wildlife
Theme_Keyword: Wetland ecosystems
Theme_Keyword: Migratory species
Theme_Keyword: Genetics
Theme_Keyword: Polymerase chain reaction

Theme:

Theme_Keyword_Thesaurus: MeSH-National Library of Medicine
Theme_Keyword: DNA
Theme_Keyword: DNA, Mitochondrial
Theme_Keyword: Genetic markers
Theme_Keyword: Polymorphism, SNP

Theme:

Theme_Keyword_Thesaurus: None
Theme_Keyword: Genetic structure
Theme_Keyword: Barrow's Goldeneye
Theme_Keyword: Bucephala islandica
Theme_Keyword: Common Goldeneye
Theme_Keyword: Bucephala clangula
Theme_Keyword: Black Scoter
Theme_Keyword: Melanitta americana
Theme_Keyword: Bufflehead
Theme_Keyword: Bucephala albeola
Theme_Keyword: Common Eider
Theme_Keyword: Somateria mollissima
Theme_Keyword: Common Merganser
Theme_Keyword: Mergus merganser
Theme_Keyword: Harlequin Duck
Theme_Keyword: Histrionicus histrionicus
Theme_Keyword: Hooded Merganser
Theme_Keyword: Lophodytes cucullatus
Theme_Keyword: King Eider
Theme_Keyword: Somateria spectabilis
Theme_Keyword: Long-tailed Duck
Theme_Keyword: Clangula hyemalis
Theme_Keyword: Red-breasted Merganser
Theme_Keyword: Mergus serrator
Theme_Keyword: Spectacled Eider
Theme_Keyword: Somateria fischeri
Theme_Keyword: Steller's Eider
Theme_Keyword: Polysticta stelleri
Theme_Keyword: Surf Scoter
Theme_Keyword: Melanitta perspicillata
Theme_Keyword: White-winged Scoter
Theme_Keyword: Melanitta deglandi

Place:

Place_Keyword_Thesaurus: USGS Geographic Names Information System
Place_Keyword: Alaska
Place_Keyword: Rhode Island
Place_Keyword: Massachusetts
Place_Keyword: Maine
Place_Keyword: Minnesota
Place_Keyword: Washington
Place_Keyword: Oregon
Place_Keyword: Virginia
Place_Keyword: Maryland

Place:

Place_Keyword_Thesaurus: NGA GEOnet Names Server
Place_Keyword: British Columbia
Place_Keyword: Quebec
Place_Keyword: Northwest Territories
Place_Keyword: Ontario
Place_Keyword: Yukon Territory
Place_Keyword: Nunavut
Place_Keyword: Nova Scotia
Place_Keyword: Saskatchewan
Place_Keyword: Baja California

Taxonomy:

Keywords/Taxon:

Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: Animals
Taxonomic_Keywords: Birds
Taxonomic_Keywords: Waterfowl

Taxonomic_System:

Classification_System/Authority:

Classification_System_Citation:

Citation_Information:

Originator: ITIS Integrated Taxonomic Information System
Publication_Date: Unknown
Title: ITIS Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: online database
Series_Information:

Series_Name: Taxonomic Serial Number
Issue_Identification: TSN 175161

Publication_Information:

Publication_Place: online
Publisher: ITIS-North America

Other_Citation_Details:

Taxonomic details for North American sea ducks were retrieved February 10, 2021, from the Integrated Taxonomic Information System on-line database https://www.itis.gov

Online_Linkage: https://www.itis.gov

Classification_System_Modifications:

In accordance with the American Ornithologists' Union 7th edition, including the 60th supplement (AOS 2019), Melanitta deglandi (White-winged Scoter) and M. americana (Black Scoter) are recognized species. We have retained ITIS taxonomic serial numbers (TSN) for these species, though ITIS currently considers Melanitta deglandi and M. americana invalid.

Taxonomic_Procedures:

Species were identified by skilled observers in the field based on general appearance of feathers and plumage, behavior, and vocalization.

Taxonomic_Classification:

Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Taxonomic_Classification:

Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Taxonomic_Classification:

Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertabrata
Taxonomic_Classification:

Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:

Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Taxonomic_Classification:

Taxon_Rank_Name: Order
Taxon_Rank_Value: Anseriformes
Taxonomic_Classification:

Taxon_Rank_Name: Family
Taxon_Rank_Value: Anatidae
Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Bucephala
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Bucephala clangula
Applicable_Common_Name: Common Goldeneye
Applicable_Common_Name: TSN 175141

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Bucephala islandica
Applicable_Common_Name: Barrow's Goldeneye
Applicable_Common_Name: TSN 175144

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Bucephala albeola
Applicable_Common_Name: Bufflehead
Applicable_Common_Name: TSN 175145

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Melanitta
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Melanitta americana
Applicable_Common_Name: Black Scoter
Applicable_Common_Name: TSN 714092

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Melanitta perspicillata
Applicable_Common_Name: Surf Scoter
Applicable_Common_Name: TSN 175170

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Melanitta deglandi
Applicable_Common_Name: White-winged Scoter
Applicable_Common_Name: TSN 175167

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Somateria
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Somateria mollissima
Applicable_Common_Name: Common Eider
Applicable_Common_Name: TSN 175155

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Somateria spectabilis
Applicable_Common_Name: King Eider
Applicable_Common_Name: TSN 175160

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Somateria fischeri
Applicable_Common_Name: Spectacled Eider
Applicable_Common_Name: TSN 175161

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Mergus
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Mergus merganser
Applicable_Common_Name: Common Merganser
Applicable_Common_Name: TSN 175185

Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Mergus serrator
Applicable_Common_Name: Red-breasted Merganser
Applicable_Common_Name: TSN 175187

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Histrionicus
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Histrionicus histrionicus
Applicable_Common_Name: Harlequin Duck
Applicable_Common_Name: TSN 175149

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Lophodytes
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Lophodytes cucullatus
Applicable_Common_Name: Hooded Merganser
Applicable_Common_Name: TSN 175183

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Clangula
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Clangula hyemalis
Applicable_Common_Name: Long-tailed Duck
Applicable_Common_Name: TSN 175147

Taxonomic_Classification:

Taxon_Rank_Name: Genus
Taxon_Rank_Value: Polysticta
Taxonomic_Classification:

Taxon_Rank_Name: Species
Taxon_Rank_Value: Polysticta stelleri
Applicable_Common_Name: Stellers's Eider
Applicable_Common_Name: TSN 175153

Access_Constraints: None
Use_Constraints:

It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications that reference this dataset.

Point_of_Contact:

Contact_Information:

Contact_Organization_Primary:

Contact_Organization: U.S. Geological Survey, Alaska Science Center

Contact_Address:

Address_Type: Mailing and Physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA

Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov

Cross_Reference:

Citation_Information:

Originator: Lavretsky, P.
Originator: Wilson, R.E. (ORCID: 0000-0003-1800-0183)
Originator: Talbot, S.L. (ORCID: 0000-0002-3312-721)
Originator: Sonsthagen, S.A. (ORCID: 0000-0001-6215-5874)
Publication_Date: 2021
Title:

Phylogenomics reveals ancient and contemporary gene flow contributing to the evolutionary history of sea ducks (Tribe Mergini)

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Molecular Phylogenetics and Evolution
Issue_Identification: in press

Publication_Information:

Publication_Place: online
Publisher: Elsevier

Other_Citation_Details:

Lavretsky, P., Wilson, R.E., Talbot, S.L., Sonsthagen, S.A. 2021. Phylogenomics reveals ancient and contemporary gene flow contributing to the evolutionary history of sea ducks (Tribe Mergini). Molecular Phylogenetics and Evolution, in press. doi:10.1016/j.ympev.2021.107164

Online_Linkage: https://doi.org/10.1016/j.ympev.2021.107164

Data_Quality_Information:

Attribute_Accuracy:

Attribute_Accuracy_Report:

Identifying information about samples were cross-checked with original field data. Polymerase chain reaction (PCR) amplification and electrophoresis followed protocols described in Sonsthagen et al. 2007. Quality control (QC) included a minimum of 20% re-extraction and PCR replication for each locus and all laboratory techniques were performed using sterile procedures. All duplicate characterizations of the same individual resulted in concordant data. NCBI BioSample numbers were cross-referenced to the appropriate samples in attributes.

Logical_Consistency_Report: Attribute values fall within expected ranges.
Completeness_Report:

Data set is complete. No data were omitted and there are no missing data.

Lineage:

Methodology:

Methodology_Type: Lab
Methodology_Description:

Preserved blood and tissue samples were provided from the various contributors.

Methodology:

Methodology_Type: Lab
Methodology_Description:

DNA was extracted using a Qiagen Dneasy Blood and Tissue extraction kit (QIAGEN, Düsseldorf, Germany) following manufacturer’s protocol.

Methodology:

Methodology_Type: Lab
Methodology_Description:

Polymerase chain reaction (PCR) amplification and sequencing of mitochondrial DNA followed Sonsthagen et al. 2007. For quality control purposes, we extracted, amplified, and genotyped, 20% of the samples in duplicate.

Methodology:

Methodology_Type: Lab
Methodology_Description:

Double digest restriction-site associated DNA (ddRAD) library preparation, sequencing, assembly of reads, and alignment of loci followed DaCosta and Sorenson 2014. DNA was digested with two restriction enzymes SfbI and EcoRI and ligated adapters included dual indices. Libraries were size-selected (size range 300–450 base pairs), amplified for 20 cycles, and single-end sequenced (150 base pairs) on an Illumina HiSeq 2500 at the Tufts University Core Genomics Facility. Raw data were uploaded to NCBI Short Read Archive.

Source_Information:

Source_Citation:

Citation_Information:

Originator: Sonsthagen, S.A.
Originator: Talbot, S.L.
Originator: McCracken, K.G.
Publication_Date: 2007
Title:

Genetic characterization of common eiders (Somateria mollissima) breeding on the Yukon-Kuskokwim Delta, Alaska

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: Condor
Issue_Identification: 109(4):879–894

Publication_Information:

Publication_Place: Oxford, UK
Publisher: Oxford University Press

Other_Citation_Details:

Sonsthagen, S.A., Talbot, S.L., McCracken, K.G. 2007. Genetic characterization of common eiders (Somateria mollissima) breeding on the Yukon-Kuskokwim Delta, Alaska. Condor 109(4):879–894

Online_Linkage: http://www.jstor.org/stable/40072332

Type_of_Source_Media: publication
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2007

Source_Currentness_Reference: publication date

Source_Citation_Abbreviation: Sonsthagen et al. 2007
Source_Contribution:

Laboratory Technique Citation: describes DNA extraction, polymerase chain reaction (PCR) amplification and electrophoresis and sequencing protocols.

Source_Information:

Source_Citation:

Citation_Information:

Originator: DaCosta, J.M.
Originator: Sorenson, M.D.
Publication_Date: 2014
Title:

Amplification biases and consistent recovery of loci in a double-digest RAD-seq protocol

Geospatial_Data_Presentation_Form: journal article
Series_Information:

Series_Name: PLoS ONE
Issue_Identification: 9(9):e106713

Publication_Information:

Publication_Place: online
Publisher: Public Library of Science (PLoS)

Other_Citation_Details:

DaCosta, J.M., Sorenson, M.D. 2014. Amplification biases and consistent recovery of loci in a double-digest RAD-seq protocol. PLoS ONE 9(9):e106713 doi:10.1371/journal.pone.0106713

Online_Linkage: https://doi.org/10.1371/journal.pone.0106713

Type_of_Source_Media: publication
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2014

Source_Currentness_Reference: publication date

Source_Citation_Abbreviation: DaCosta and Sorenson 2014
Source_Contribution:

Laboratory Technique Citation: describes double-digest restriction associated DNA sequence library preparation and read assembly protocol.

Source_Information:

Source_Citation:

Citation_Information:

Originator: National Center for Biotechnology Information (NCBI)
Publication_Date: Unknown
Title: Sequence Read Archive (SRA)
Geospatial_Data_Presentation_Form: database
Online_Linkage: https://www.ncbi.nlm.nih.gov/sra

Type_of_Source_Media: digital database file
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2020

Source_Currentness_Reference: observed

Source_Citation_Abbreviation: NCBI SRA
Source_Contribution:

Raw Illumina reads are publicly accessible in the NCBI SRA database (accession numbers provided in this data package)

Source_Information:

Source_Citation:

Citation_Information:

Originator: National Center for Biotechnology Information (NCBI)
Publication_Date: Unknown
Title: BioSample
Geospatial_Data_Presentation_Form: database
Online_Linkage: https://www.ncbi.nlm.nih.gov/biosample/

Type_of_Source_Media: digital database file
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2020

Source_Currentness_Reference: observed

Source_Citation_Abbreviation: NCBI BioSample
Source_Contribution:

Information regarding sampling and the biological source material used in this study are publicly accessible in the NCBI BioSample database (accession numbers provided in this data package).

Source_Information:

Source_Citation:

Citation_Information:

Originator: National Center for Biotechnology Information (NCBI)
Publication_Date: Unknown
Title: GenBank
Geospatial_Data_Presentation_Form: database
Online_Linkage: https://www.ncbi.nlm.nih.gov/genbank

Type_of_Source_Media: digital database file
Source_Time_Period_of_Content:

Time_Period_Information:

Single_Date/Time:

Calendar_Date: 2020

Source_Currentness_Reference: observed

Source_Citation_Abbreviation: NCBI GenBank
Source_Contribution:

Sequence information are publicly accessible in the NCBI Genbank database (accession numbers provided in this data package).

Process_Step:

Process_Description:

Raw Illumina reads were de-multiplexed and processed using DaCosta and Sorenson (2014) pipelines.

Process_Date: Unknown

Process_Step:

Process_Description:

Raw read data generated in this study were submitted to the NCBI short read archive publicly available high throughput sequence data database.

Process_Date: Unknown
Source_Produced_Citation_Abbreviation: NCBI SRA

Spatial_Data_Organization_Information:

Indirect_Spatial_Reference:

States and providences are listed to describe generalized field sampling locations.

Entity_and_Attribute_Information:

Detailed_Description:

Entity_Type:

Entity_Type_Label: seaduck_genomicData_sonsthagen
Entity_Type_Definition:

Table with sample identifying information, scientific name, sample location data, NCBI BioSample accession numbers, and NCBI GenBank accession numbers. Presented in a Comma Separated Value (CSV) formatted table.

Entity_Type_Definition_Source: Author defined

Attribute:

Attribute_Label: Sample_ID
Attribute_Definition: Unique laboratory label for each individual characterized.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique alphanumeric label assigned by the laboratory for materials originating from a single individual.

Attribute:

Attribute_Label: Sample_Location
Attribute_Definition: Place names of sample collection site.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Alaska
Enumerated_Domain_Value_Definition: Samples collected in Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Juneau, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Juneau, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Kachemak Bay Alaska
Enumerated_Domain_Value_Definition: Samples collected in Kachemak, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Aropuk Lake, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Aropuk Lake, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Gulkana River, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Gulkana River, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Attu Island, Aleutian Islands, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Attu Island, Aleutian Islands, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Yukon-Kuskokwim Delta, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Yukon-Kuskokwim Delta, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Barrow, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Utqiagvik (Barrow), Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Colville River, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Colville River, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Izembek Lagoon, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Izembek Lagoon, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Prince William Sound, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Prince William Sound, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Yukon River, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Yukon River, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Yukon-Charley Preserve, Alaska
Enumerated_Domain_Value_Definition:

Samples collected in Yukon-Charley Rivers National Preserve, Alaska, USA

Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Fairbanks, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Fairbanks, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Duchess Island, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Duchess Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: NorthStar, Alaska
Enumerated_Domain_Value_Definition: Samples collected in NorthStar, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Point Thompson, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Point Thompson, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Mary Sachs, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Mary Sachs Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Cold Bay, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Cold Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Susitna River, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Susitna River, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Anchor River, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Anchor River, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Takli Island, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Takli Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Jim River, Dalton Highway, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Jim River, Dalton Highway, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Kuparuk River, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Kuparuk River, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Prudhoe Bay, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Prudhoe Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Yukon-Kuskokwim Delta, Kigigak Island, Alaska
Enumerated_Domain_Value_Definition:

Samples collected in Yukon-Kushokwim Delta, Kigigak Island, Alaska, USA

Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Dalton Highway, Alaska
Enumerated_Domain_Value_Definition:

Samples collected in Dalton Highway, south of Deadhorse, Alaska, USA

Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Tangle Lakes, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Tangle Lakes, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Broad Creek, Virginia
Enumerated_Domain_Value_Definition: Samples collected in Broad Creek, Virginia, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Tangier, Maryland
Enumerated_Domain_Value_Definition: Samples collected in Tangier, Maryland, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Choptank River, Maryland
Enumerated_Domain_Value_Definition: Samples collected in Choptank River, Maryland, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Easton Bay, Rhode Island
Enumerated_Domain_Value_Definition: Samples collected in Easton Bay, Rhode Island, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Calf Island, Suffolk, Massachusetts
Enumerated_Domain_Value_Definition: Samples collected in Calf Island, Suffolk, Massachusetts, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Maine
Enumerated_Domain_Value_Definition: Samples collected in Maine, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Minnesota
Enumerated_Domain_Value_Definition: Samples collected in Minnesota, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Oregon
Enumerated_Domain_Value_Definition: Samples collected in Oregon, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Washington
Enumerated_Domain_Value_Definition: Samples collected in Washington, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Morse Creek, Washington
Enumerated_Domain_Value_Definition: Samples collected in Morse Creek, Washington, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Duckabush River, Washington
Enumerated_Domain_Value_Definition: Samples collected in Duckabush River, Washington, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: British Columbia
Enumerated_Domain_Value_Definition: Samples collected in British Columbia, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Kitimat, British Columbia
Enumerated_Domain_Value_Definition: Samples collected in Kitimat, British Columbia, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Semiahmoo Bay, British Columbia
Enumerated_Domain_Value_Definition: Samples collected in Semiahmoo Bay, British Columbia, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Crofton, British Columbia
Enumerated_Domain_Value_Definition: Samples collected in Crofton, British Columbia, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Saint-Omer, Quebec
Enumerated_Domain_Value_Definition: Samples collected in Saint-Omer, Quebec, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Riviere du Loup, Iles du Gros-Pot, Quebec
Enumerated_Domain_Value_Definition:

Samples collected in Riviere du Loup, Iles du Gros-Pot, Quebec, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Iles Laval, Quebec
Enumerated_Domain_Value_Definition: Samples collected in Iles Laval, near Montreal, Quebec, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Riviere Mecatina, Quebec
Enumerated_Domain_Value_Definition:

Samples collected in Rivière du Petit Mécatina, west of Tête-à-la-Baleine, Quebec, Canada

Enumerated_Domain_Value_Definition_Source: GNGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Nastapoka, Quebec
Enumerated_Domain_Value_Definition: Samples collected in Nastapoka, Quebec, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Forestville, Quebec
Enumerated_Domain_Value_Definition: Samples collected in Forestville, Quebec, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Yellowknife, Northwest Territories
Enumerated_Domain_Value_Definition: Samples collected in Yellowknife, Northwest Territories, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Banks Island, Northwest Territories
Enumerated_Domain_Value_Definition:

Samples collected in Banks Island, Northwest Territories, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Cardinal Lake, Northwest Territories
Enumerated_Domain_Value_Definition:

Samples collected in Cardinal Lake, Northwest Territories, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Yukon
Enumerated_Domain_Value_Definition: Samples collected in Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Liard River, Yukon
Enumerated_Domain_Value_Definition: Samples collected in Liard River, Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Frances River, Yukon
Enumerated_Domain_Value_Definition:

Samples collected in Frances River (tributary of the Liard River), Yukon Territory, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Morley River, Yukon
Enumerated_Domain_Value_Definition: Samples collected in Morley River, Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Big Creek, Yukon
Enumerated_Domain_Value_Definition: Samples collected in Big Creek, Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Junction 37, Yukon
Enumerated_Domain_Value_Definition:

Samples collected in Junction 37, near Watson Lake, Yukon Territory, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Teslin, Yukon
Enumerated_Domain_Value_Definition: Samples collected in Teslin, Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Sawmill, Yukon
Enumerated_Domain_Value_Definition: Samples collected in Sawmill, Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Old Crow, Yukon
Enumerated_Domain_Value_Definition: Samples collected in Old Crow, Yukon Territory, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Southampton Island, Nunavut
Enumerated_Domain_Value_Definition: Samples collected in Southampton Island, Nunavut, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Nauyak Lake, Nunavut
Enumerated_Domain_Value_Definition:

Samples collected in Nauyak Lake, on Kiillinnguyaq (the Kent Peninsula), Nunavut, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Kagloryuak River, Nunavut
Enumerated_Domain_Value_Definition:

Samples collected in Kagloryuak River, Victoria Island, Nunavut, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Windermere Basin, Ontario
Enumerated_Domain_Value_Definition:

Samples collected in Windermere Basin, Hamilton, Ontario, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Lake Wanapitei, Ontario
Enumerated_Domain_Value_Definition: Samples collected in Wanapitei Lake, Ontario, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Ranger Lake, Ontario
Enumerated_Domain_Value_Definition: Samples collected in Ranger Lake, Ontario, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Echo River, Ontario
Enumerated_Domain_Value_Definition: Samples collected in Echo River, near Echo Bay, Ontario, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Ottawa, Ontario
Enumerated_Domain_Value_Definition: Samples collected in Ottawa, Ontario, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Canada Center for Inland Waters Slip, Ontario
Enumerated_Domain_Value_Definition:

Samples collected in Canada Center for Inland Waters Slip, Burlington, Ontario, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Toronto Slip, Ontario
Enumerated_Domain_Value_Definition: Samples collected in Toronto Slip, Toronto, Ontario, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Bon Portage Island, Nova Scotia
Enumerated_Domain_Value_Definition: Samples collected in Bon Portage Island, Nova Scotia, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Johns Island, Nova Scotia
Enumerated_Domain_Value_Definition:

Samples collected in Johns Island, 20 km east of Barrington, Nova Scotia, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Long Island, Bird Island- Inner East, Nova Scotia
Enumerated_Domain_Value_Definition:

Samples collected in Long Island, Bird Island- Inner East, Nova Scotia, Canada

Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Canada: Redberry Lake, Saskatchewan
Enumerated_Domain_Value_Definition: Samples collected in Redberry Lake, Saskatchewan, Canada
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: Mexico: San Quintin, Baja California
Enumerated_Domain_Value_Definition: Samples collected in San Quintin, Baja California, Mexico
Enumerated_Domain_Value_Definition_Source: NGA GEOnet Names Server

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Iowa
Enumerated_Domain_Value_Definition: Samples collected in Iowa, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Kodiak Island, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Kodiak Island, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Homer, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Homer, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Anchorage, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Anchorage, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Buckland, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Buckland, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute_Domain_Values:

Enumerated_Domain:

Enumerated_Domain_Value: United States: Hallo Bay, Alaska
Enumerated_Domain_Value_Definition: Samples collected in Hallo Bay, Alaska, USA
Enumerated_Domain_Value_Definition_Source: Geographic Names Information System (GNIS)

Attribute:

Attribute_Label: NCBI_SRA_Project
Attribute_Definition:

SRA BioProject Accession Number. A unique identifier (assigned by the National Center for Biotechnology Information; NCBI) of the collection of biological source material related to a single initiative used in this study. This number may be used to retrieve detailed sample and experiment information from the NCBI BioSample database: https://www.ncbi.nlm.nih.gov/biosample Blank cells indicate that source data were not provided for this sample.

Attribute_Definition_Source: NCBI SRA
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier: an alphanumeric accession number available in the NCBI BioSample database.

Attribute:

Attribute_Label: NCBI_BioSample
Attribute_Definition:

BioSample Accession Number. A unique identifier (assigned by the National Center for Biotechnology Information; NCBI) of the biological source material used in this study. This number may be used to retrieve detailed sample and experiment information from the NCBI BioSample database: https://www.ncbi.nlm.nih.gov/biosample Blank cells indicate that source data were not provided for this sample.

Attribute_Definition_Source: NCBI BioSample
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier: an alphanumeric accession number available in the NCBI BioSample database.

Attribute:

Attribute_Label: GenBank_Accession
Attribute_Definition:

GenBank Accession Number. A unique identifier (assigned by the National Center for Biotechnology Information; NCBI) of the mitochondrial DNA control region nucleotide sequence. This number may be used to retrieve detailed sample and sequence information from the NCBI GenBank database: https://www.ncbi.nlm.nih.gov/genbank Blank cells indicate that sequence data from this locus were not collected for this sample.

Attribute_Definition_Source: NCBI GenBank accession
Attribute_Domain_Values:

Unrepresentable_Domain:

Unique identifier: an alphanumeric accession number available in the NCBI GenBank database.

Genomic Data of North American Sea Ducks

Metadata: