Assessment of Contemporary Genetic Diversity and Inter-Taxa/Inter-Region Exchange of Avian Paramyxovirus Serotype 1 in Wild Birds Sampled in North America, 1986-2014

Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: Andrew M. Ramey (ORCID: 0000-0002-3601-8400)
Publication_Date: 2017
Title:
Assessment of Contemporary Genetic Diversity and Inter-Taxa/Inter-Region Exchange of Avian Paramyxovirus Serotype 1 in Wild Birds Sampled in North America, 1986-2014
Geospatial_Data_Presentation_Form: spreadsheet
Publication_Information:
Publication_Place: Anchorage, AK
Publisher: U.S. Geological Survey, Alaska Science Center
Other_Citation_Details:
Suggested Citation: Ramey, A., 2017, Assessment of Contemporary Genetic Diversity and Inter-Taxa/Inter-Region Exchange of Avian Paramyxovirus Serotype 1 in Wild Birds Sampled in North America, 1986-2014: U.S. Geological Survey data release, https://dx.doi.org/10.5066/F7MP51GP
Online_Linkage: https://dx.doi.org/10.5066/F7MP51GP
Larger_Work_Citation:
Citation_Information:
Originator: Reeves, A.
Originator: Ramey, A.M.
Publication_Date: 201606
Title:
Examining the Role of Migratory Birds in the Movement of Avian Pathogens Between and Within Continents
Geospatial_Data_Presentation_Form: web site
Series_Information:
Series_Name: none
Issue_Identification: none
Publication_Information:
Publication_Place: Anchorage, AK
Publisher: U.S. Geological Survey, Alaska Science Center
Online_Linkage: https://alaska.usgs.gov/portal/project.php?project_id=321
Description:
Abstract:
Data set pertaining to avian paramyxovirus (APMV-1) sequences used in phylogenetic analyses. Data contains GenBank Accession numbers, host species common name and taxonomic order, collection year, and collection location.
Purpose:
The purpose of this data set is to support analysis of contemporary genetic diversity and evidence for inter-taxa/inter-region exchange of APMV-1 in wild birds sampled in North America.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1986
Ending_Date: 2014
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Description_of_Geographic_Extent:
The study area is worldwide, as virus sequences from around the globe are used in phylogenetic analyses. Further analyses restricted data to only viruses collected from North America.
Bounding_Coordinates:
West_Bounding_Coordinate: -180.00000
East_Bounding_Coordinate: -45.00000
North_Bounding_Coordinate: 75.00000
South_Bounding_Coordinate: 15.00000
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:ASC91
Theme:
Theme_Keyword_Thesaurus: ISO 19115
Theme_Keyword: biota
Theme:
Theme_Keyword_Thesaurus: NASA GCMD Earth Science Keywords Thesaurus
Theme_Keyword: Earth Science
Theme_Keyword: Biological Classification
Theme_Keyword: Animals/Vertebrates
Theme_Keyword: Birds
Theme:
Theme_Keyword_Thesaurus: USGS CSA Biocomplexity Thesaurus
Theme_Keyword: Aquatic birds
Theme_Keyword: Waterfowl
Theme_Keyword: Genetic Diversity
Theme_Keyword: Phylogeny
Theme:
Theme_Keyword_Thesaurus: NIH MeSH Thesaurus
Theme_Keyword: Natural Science Disciplines
Theme_Keyword: Biological Science Disciplines
Theme_Keyword: Biology
Theme_Keyword: Genetics
Theme_Keyword: Disease
Place:
Place_Keyword_Thesaurus: USGS Geographic Names Information System
Place_Keyword: United States
Place:
Place_Keyword_Thesaurus: NGA GEOnet Names Server
Place_Keyword: Canada
Taxonomy:
Keywords/Taxon:
Taxonomic_Keyword_Thesaurus: None
Taxonomic_Keywords: single species
Taxonomic_Keywords: animals
Taxonomic_Keywords: vertebrates
Taxonomic_Keywords: bird
Taxonomic_System:
Classification_System/Authority:
Classification_System_Citation:
Citation_Information:
Originator:
M. Ruggiero & D. Gordon, eds. 2013. Consensus Management Hierarchy for the ITIS & Species2000 Catalogue of Life. Contributors: Nicolas Bailly, Thierry Bourgoin, Richard Brusca, Thomas Cavalier-Smith, Daphne Fautin, Dennis Gordon, Gerald Guala, Michael Guiry, Paul Kirk, Elliot Lefkowitz, David Mabberly, David Maddison, Alan Paton, Michael Ruggiero, Peter Stevens, and Brian Tyndall
Publication_Date: Unpublished material
Title: Integrated Taxonomic Information System
Geospatial_Data_Presentation_Form: database
Series_Information:
Series_Name: Integrated Taxonomic Classification System
Issue_Identification: TSN 174371
Publication_Information:
Publication_Place: online
Publisher: ITIS-North America
Other_Citation_Details:
Retrieved on April 27, 2016, from the Integrated Taxonomic Information System on-line database http://www.itis.gov
Online_Linkage:
http://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=174371
Taxonomic_Procedures:
Avian species sampled were identified by common name of host species as reported by original virus sequence author within the National Center for Biotechnology Information's GenBank database
Taxonomic_Completeness: N/A
Taxonomic_Classification:
Taxon_Rank_Name: Kingdom
Taxon_Rank_Value: Animalia
Applicable_Common_Name: Animal
Applicable_Common_Name: animaux
Applicable_Common_Name: animals
Taxonomic_Classification:
Taxon_Rank_Name: Subkingdom
Taxon_Rank_Value: Bilateria
Taxonomic_Classification:
Taxon_Rank_Name: Infrakingdom
Taxon_Rank_Value: Deuterostomia
Taxonomic_Classification:
Taxon_Rank_Name: Phylum
Taxon_Rank_Value: Chordata
Applicable_Common_Name: cordés
Applicable_Common_Name: cordado
Applicable_Common_Name: chordates
Taxonomic_Classification:
Taxon_Rank_Name: Subphylum
Taxon_Rank_Value: Vertebrata
Applicable_Common_Name: vertebrado
Applicable_Common_Name: vertébrés
Applicable_Common_Name: vertebrates
Taxonomic_Classification:
Taxon_Rank_Name: Infraphylum
Taxon_Rank_Value: Gnathostomata
Taxonomic_Classification:
Taxon_Rank_Name: Superclass
Taxon_Rank_Value: Tetrapoda
Taxonomic_Classification:
Taxon_Rank_Name: Class
Taxon_Rank_Value: Aves
Applicable_Common_Name: Birds
Applicable_Common_Name: oiseaux
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Pelecaniformes
Applicable_Common_Name: Pelicans
Applicable_Common_Name: pélicans
Applicable_Common_Name: Ibises
Applicable_Common_Name: ibis
Applicable_Common_Name: Herons
Applicable_Common_Name: hérons
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Pelecanidae
Applicable_Common_Name: Pelicans
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Pelecanus
Applicable_Common_Name: Pelicans
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Pelecanus erythrorhynchos
Applicable_Common_Name: Pelícano blanco
Applicable_Common_Name: American White Pelican
Applicable_Common_Name: Pélican d'Amérique
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Anseriformes
Applicable_Common_Name: Ducks
Applicable_Common_Name: Geese
Applicable_Common_Name: Screamers
Applicable_Common_Name: Swans
Applicable_Common_Name: Waterfowl
Applicable_Common_Name: canards
Applicable_Common_Name: cygnes
Applicable_Common_Name: oies
Applicable_Common_Name: sauvagine
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Anatidae
Applicable_Common_Name: Ducks
Applicable_Common_Name: Geese
Applicable_Common_Name: Swans
Applicable_Common_Name: canards
Applicable_Common_Name: cygnes
Applicable_Common_Name: oies
Taxonomic_Classification:
Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Anserinae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Cygnus
Applicable_Common_Name: Swans
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Cygnus olor
Applicable_Common_Name: Mute Swan
Applicable_Common_Name: cygne tuburculé
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Branta
Applicable_Common_Name: Brent Geese
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Branta canadensis
Applicable_Common_Name: Ganso canadiense
Applicable_Common_Name: Canada Goose
Applicable_Common_Name: bernache du Canada
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Branta bernicla
Applicable_Common_Name: Brant Goose
Applicable_Common_Name: Brent Goose
Applicable_Common_Name: Ganso de collar
Applicable_Common_Name: Brant
Applicable_Common_Name: bernache cravant
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Anser
Applicable_Common_Name: Bean Geese
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anser albifrons
Applicable_Common_Name: Ganso careto-mayor
Applicable_Common_Name: Greater White-fronted Goose
Applicable_Common_Name: oie rieuse
Taxonomic_Classification:
Taxon_Rank_Name: Subfamily
Taxon_Rank_Value: Anatinae
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Anas
Applicable_Common_Name: Dabbling Ducks
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas platyrhynchos
Applicable_Common_Name: Pato de collar
Applicable_Common_Name: Mallard
Applicable_Common_Name: canard colvert
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas rubripes
Applicable_Common_Name: American Black Duck
Applicable_Common_Name: canard noir
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas fulvigula
Applicable_Common_Name: Mottled Duck
Applicable_Common_Name: Pato tejano
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas strepera
Applicable_Common_Name: Pato friso
Applicable_Common_Name: Gadwall
Applicable_Common_Name: canard chipeau
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas acuta
Applicable_Common_Name: Pato golondrino
Applicable_Common_Name: Northern Pintail
Applicable_Common_Name: canard pilet
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas crecca
Applicable_Common_Name: Eurasian Teal
Applicable_Common_Name: Cerceta ala verde
Applicable_Common_Name: Green-winged Teal
Applicable_Common_Name: sarcelle d'hiver
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Anas discors
Applicable_Common_Name: Cerceta ala azul
Applicable_Common_Name: Blue-winged Teal
Applicable_Common_Name: sarcelle à ailes bleues
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Aythya
Applicable_Common_Name: Diving Ducks
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Aythya americana
Applicable_Common_Name: Pato cabeza roja
Applicable_Common_Name: Redhead
Applicable_Common_Name: fuligule à tête rouge
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Somateria
Applicable_Common_Name: Greater Eiders
Applicable_Common_Name: Typical Eiders
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Somateria fischeri
Applicable_Common_Name: Spectacled Eider
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Charadriiformes
Applicable_Common_Name: Shore Birds
Applicable_Common_Name: Gulls
Applicable_Common_Name: Alcids
Applicable_Common_Name: Plovers
Applicable_Common_Name: Oystercatchers
Applicable_Common_Name: goélands
Applicable_Common_Name: alcidés
Applicable_Common_Name: Auks
Applicable_Common_Name: huîtriers
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Scolopacidae
Applicable_Common_Name: Sandpipers
Applicable_Common_Name: bécasseaux
Applicable_Common_Name: Snipes
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Arenaria
Applicable_Common_Name: Turnstones
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Arenaria interpres
Applicable_Common_Name: Vuelvepiedras rojizo
Applicable_Common_Name: Ruddy Turnstone
Applicable_Common_Name: Tournepierre à collier
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Calidris
Applicable_Common_Name: Stints
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Calidris canutus
Applicable_Common_Name: Playero canuto
Applicable_Common_Name: Red Knot
Applicable_Common_Name: Bécasseau maubèche
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Calidris alpina
Applicable_Common_Name: Playero dorso rojo
Applicable_Common_Name: Dunlin
Applicable_Common_Name: Bécasseau variable
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Laridae
Applicable_Common_Name: Gulls
Applicable_Common_Name: Terns
Applicable_Common_Name: becs-en-ciseaux
Applicable_Common_Name: goélands
Applicable_Common_Name: labbes
Applicable_Common_Name: mouettes
Applicable_Common_Name: Skimmers
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Larus
Applicable_Common_Name: Gulls
Applicable_Common_Name: Ivory Gulls
Applicable_Common_Name: Kittiwakes
Applicable_Common_Name: Ross' Gulls
Applicable_Common_Name: Sabine's Gulls
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Larus marinus
Applicable_Common_Name: Great Black-backed Gull
Applicable_Common_Name: Goéland marin
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Larus argentatus
Applicable_Common_Name: Gaviota plateada
Applicable_Common_Name: Herring Gull
Applicable_Common_Name: Goéland argenté
Applicable_Common_Name: European Herring Gull
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Larus delawarensis
Applicable_Common_Name: Gaviota pico anillado
Applicable_Common_Name: Ring-billed Gull
Applicable_Common_Name: Goéland à bec cerclé
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Leucophaeus
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Leucophaeus atricilla
Applicable_Common_Name: Mouette atricille
Applicable_Common_Name: Laughing Gull
Applicable_Common_Name: Gaviota reidora
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Leucophaeus pipixcan
Applicable_Common_Name: Mouette de Franklin
Applicable_Common_Name: Gaviota de Franklin
Applicable_Common_Name: Franklin's Gull
Taxonomic_Classification:
Taxon_Rank_Name: Order
Taxon_Rank_Value: Suliformes
Applicable_Common_Name: Cormorants
Applicable_Common_Name: cormorans
Taxonomic_Classification:
Taxon_Rank_Name: Family
Taxon_Rank_Value: Phalacrocoracidae
Applicable_Common_Name: Cormorants
Applicable_Common_Name: Shags
Taxonomic_Classification:
Taxon_Rank_Name: Genus
Taxon_Rank_Value: Phalacrocorax
Applicable_Common_Name: Cormorants
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Phalacrocorax carbo
Applicable_Common_Name: Great Cormorant
Applicable_Common_Name: Grand Cormoran
Taxonomic_Classification:
Taxon_Rank_Name: Species
Taxon_Rank_Value: Phalacrocorax auritus
Applicable_Common_Name: Double-crested cormorant
Access_Constraints: None
Use_Constraints:
It is requested that the authors and the USGS Alaska Science Center be cited for any subsequent publications referenced to this dataset. It is strongly recommended that careful attention be paid to the contents of the metadata file associated with these data to evaluate data set limitations, restrictions or intended use.
Point_of_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Dr.
City: Anchorage
State_or_Province: Alaska
Postal_Code: 99508
Country: USA
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Data_Set_Credit: U.S. Geological Survey, Alaska Science Center, Anchorage, AK
Security_Information:
Security_Classification_System: None
Security_Classification: Unclassified
Security_Handling_Description: None
Cross_Reference:
Citation_Information:
Originator: Andrew M. Ramey
Originator: Iryna V. Goraichuk
Originator: Joseph T. Hicks
Originator: Kiril M. Dimitrov
Originator: Rebecca L. Poulson
Originator: David E. Stallknecht
Originator: Justin Bahl
Originator: Claudio L. Afonso
Publication_Date: 20170303
Title:
Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America
Geospatial_Data_Presentation_Form: journal article
Series_Information:
Series_Name: 2017
Issue_Identification: 14:43
Publication_Information:
Publication_Place: Online
Publisher: Virology Journal
Other_Citation_Details:
Ramey, A. M., I. V. Goraichuk, J. T. Hicks, K. M. Dimitrov, R. L. Poulson, D. E. Stallknecht, J. Bahl, and C. L. Afonso. 2017. Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America. Virology Journal 14:43. doi:10.1186/s12985-017-0714-8
Online_Linkage: https://dx.doi.org/10.1186/s12985-017-0714-8
Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
All data were sorted in Microsoft Excel and outliers were checked for accuracy. Data were peer-reviewed for accuracy.
Logical_Consistency_Report:
No inconsistencies were found in the attribute data acquired from GenBank.
Completeness_Report:
Duplicate and recombinant sequences, sequences of man-made clonal viruses, and sequences that were obtained from vaccine-like viruses were removed from the dataset in order to analyze only viruses representing natural circulation and evolution in reservoir and spill-over hosts. Sequences were cropped to the complete coding region of the fusion gene.
Lineage:
Source_Information:
Source_Citation:
Citation_Information:
Originator:
Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, and Eric W. Sayers
Publication_Date: 20151120
Title: GenBank
Geospatial_Data_Presentation_Form: document
Series_Information:
Series_Name: Nucleic Acids Research
Issue_Identification: 44(Database issue)
Publication_Information:
Publication_Place: online
Publisher: National Center for Biotechnology Information
Type_of_Source_Media: online
Source_Time_Period_of_Content:
Time_Period_Information:
Single_Date/Time:
Calendar_Date: 2017
Source_Currentness_Reference: publication date
Source_Citation_Abbreviation: GenBank
Source_Contribution:
GenBank® (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database that contains publicly available nucleotide sequences.
Process_Step:
Process_Description:
Avian paramyxovirus serotype 1 (APMV-1) sequences were queried for completeness of the gene of interest and downloaded for use on 26 August 2016. A total of 1835 sequences were algined and cropped to create a phylogenetic tree of AMPV-1.
Process_Date: Unknown
Spatial_Data_Organization_Information:
Indirect_Spatial_Reference:
Indirect spatial references, country and/or state/province, were described by original data producers/contributors for sequences submitted to GenBank database.
Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label: Data for APMV-1 classification
Entity_Type_Definition:
Table of GenBank Accession Numbers and their corresponding sequences used for the classification of avian paramyxoviruses serotype 1 (APMV-1).
Entity_Type_Definition_Source:
Author defined and GenBank (http://www.ncbi.nlm.nih.gov/genbank/)
Attribute:
Attribute_Label: GenBank accession
Attribute_Definition:
A unique identifier given to a nucleotide sequence or other biological polymer sequence (DNA, protein) when it is submitted to National Center for Biotechnology Information NCBI GenBank database
Attribute_Definition_Source:
Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Research. 2016;44(Database issue):D67-D72. doi:10.1093/nar/gkv1276.
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: AB465606
Range_Domain_Maximum: Z12111
Detailed_Description:
Entity_Type:
Entity_Type_Label: Data for assessing exchange of APMV-1
Entity_Type_Definition:
Table of GenBank accession numbers of the sequences used. Associated data on host species and geographic location of virus sample collection is included.
Entity_Type_Definition_Source:
Author defined and GenBank (http://www.ncbi.nlm.nih.gov/genbank)
Attribute:
Attribute_Label: GenBank accession
Attribute_Definition:
A unique identifier given to a nucleotide sequence or other biological polymer sequence (DNA, protein) when it is submitted to National Center for Biotechnology Information NCBI GenBank database
Attribute_Definition_Source:
Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. GenBank. Nucleic Acids Research. 2016;44(Database issue):D67-D72. doi:10.1093/nar/gkv1276.
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: EF563813
Range_Domain_Maximum: KX857723
Attribute:
Attribute_Label: Host species
Attribute_Definition:
Common name provided by original sequence data producer reported within the National Center for Biotechnology Information's GenBank database. See taxonomy section for additional species information.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain:
Species common name, are given, except for some cormorant species (sp.) that were not identified to species in the original studies. For Latin names, see taxonomy section.
Attribute:
Attribute_Label: Host order
Attribute_Definition:
Avian taxonomic order to which the virus host belongs based on common names provided by original sequence producer, and uploaded to the Integrated Taxonomic Information System (ITIS).
Attribute_Definition_Source: ITIS.gov/
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Anseriformes
Enumerated_Domain_Value_Definition: Ducks, geese and swans
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Suliformes
Enumerated_Domain_Value_Definition: Frigatebirds, boobies, cormorants and anhingas
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Charadriformes
Enumerated_Domain_Value_Definition: Gulls and shorebirds
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Pelicaniformes
Enumerated_Domain_Value_Definition: Pelicans
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: Location
Attribute_Definition:
Location of host (wild bird) sampling. Code is made up of country (USA or Canada) and U.S. state and Canadian province abbreviation (e.g., USA/MN for USA Minnesota). Canada provinces unknown.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Canada
Enumerated_Domain_Value_Definition: Canada
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/AK
Enumerated_Domain_Value_Definition: USA Alaska
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/CA
Enumerated_Domain_Value_Definition: USA California
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/CT
Enumerated_Domain_Value_Definition: USA Connecticut
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/DE
Enumerated_Domain_Value_Definition: USA Deleware
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/FL
Enumerated_Domain_Value_Definition: USA Florida
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/ID
Enumerated_Domain_Value_Definition: USA Idaho
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/LA
Enumerated_Domain_Value_Definition: USA Louisiana
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/MA
Enumerated_Domain_Value_Definition: USA Massachusettes
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/MD
Enumerated_Domain_Value_Definition: USA Maryland
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/ME
Enumerated_Domain_Value_Definition: USA Maine
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/MI
Enumerated_Domain_Value_Definition: USA Michigan
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/MN
Enumerated_Domain_Value_Definition: USA Minnesota
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/ND
Enumerated_Domain_Value_Definition: USA North Dakota
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/NH
Enumerated_Domain_Value_Definition: USA New Hampshire
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/NJ
Enumerated_Domain_Value_Definition: USA New Jersey
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/NV
Enumerated_Domain_Value_Definition: USA Nevada
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/NY
Enumerated_Domain_Value_Definition: USA New York
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/OH
Enumerated_Domain_Value_Definition: USA Ohio
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/OR
Enumerated_Domain_Value_Definition: USA Oregon
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/TX
Enumerated_Domain_Value_Definition: USA Texas
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: USA/WI
Enumerated_Domain_Value_Definition: USA Wisconsin
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: N American region
Attribute_Definition:
Six broad geographic regions made up of different states in those regions from which samples were collected: Alaska, Canada, the Western USA (California, Idaho, Nevada, Oregon), the Midwestern USA (Michigan, Minnesota, North Dakota, Ohio, Wisconsin), the Gulf Coast USA (Florida, Louisiana, Texas), and the Eastern USA (Connecticut, Delaware, Massachusetts, Maryland, Maine, New Hampshire, New Jersey, New York, Pennsylvania). Canada provinces were not recorded.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Alaska
Enumerated_Domain_Value_Definition: Alaska
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: West
Enumerated_Domain_Value_Definition: Western USA (California, Idaho, Nevada, Oregon)
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Midwest
Enumerated_Domain_Value_Definition:
Midwestern USA (Michigan, Minnesota, North Dakota, Ohio, Wisconsin)
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Gulf Coast
Enumerated_Domain_Value_Definition: Gulf Coast USA (Florida, Louisiana, Texas)
Enumerated_Domain_Value_Definition_Source: Author defined
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: East
Enumerated_Domain_Value_Definition:
Eastern USA (Connecticut, Delaware, Massachusetts, Maryland, Maine, New Hampshire, New Jersey, New York, Pennsylvania)
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute_Domain_Values:
Enumerated_Domain:
Enumerated_Domain_Value: Canada
Enumerated_Domain_Value_Definition: Canada. Provinces unknown.
Enumerated_Domain_Value_Definition_Source: Author defined.
Attribute:
Attribute_Label: Strain
Attribute_Definition:
Unique identifier supplied by the original virus sequence producer as reported within the National Center for Biotechnology Information's GenBank database. See GenBank accession number of each strain for more information.
Attribute_Definition_Source: Author defined.
Attribute_Domain_Values:
Unrepresentable_Domain: None
Attribute:
Attribute_Label: Year
Attribute_Definition:
Year in which virus sample was collected as noted in GenBank by individual studies. See GenBank accession numbers for more information.
Attribute_Definition_Source: Author defined
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1986
Range_Domain_Maximum: 2014
Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: AK
Postal_Code: 99508
Country: United States
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Resource_Description: Authoritative source forf data.
Distribution_Liability:
Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: Zip
Format_Version_Number: 19.0
Format_Information_Content:
Zip file containing the data in CSV file format and FGDC metadata in XML and HTML formats.
File_Decompression_Technique: No compression applied
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: https://dx.doi.org/10.5066/F7MP51GP
Fees: None
Metadata_Reference_Information:
Metadata_Date: 20201125
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey, Alaska Science Center
Contact_Address:
Address_Type: mailing and physical
Address: 4210 University Drive
City: Anchorage
State_or_Province: AK
Postal_Code: 99508
Country: United States
Contact_Voice_Telephone: 907-786-7000
Contact_Electronic_Mail_Address: ascweb@usgs.gov
Metadata_Standard_Name:
FGDC Biological Data Profile of the Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001.1-1999
Metadata_Security_Information:
Metadata_Security_Classification_System: None
Metadata_Security_Classification: Unclassified
Metadata_Security_Handling_Description: None
Generated by mp version 2.9.40 on Fri Mar 31 11:42:15 2017